Difference between revisions of "TSS:Mm 101706.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|Gabrg-2= | |Gabrg-2= | ||
| − | |all_trans=M86572:-26 ENSMUST00000070735.9:-51 BC031762:-51 ENSMUST00000109290.1:117 AK049857:117 AK141129:119 AF233775:143 AF233776:143 AF233777:143 AF233778:143 AF233779:143 AF233780:143 AF233781:143 AF233782:143 AF233783:143 AF233784:143 AF233785:143 AF233786:143 AF233787:143 AF233788:143 AF233789:143 AF233790:143 AF233791:143 AF233792:143 AF233793:143 AF233794:143 AF233795:143 AF233796:143 AF233797:143 AF233798:143 AF233799:143 AF233800:143 AF233801:143 AF233802:143 AK136889:154 AK047085:182 M62374:-197 AK034338:-203 | + | |all_trans=M86572:-26 ENSMUST00000070735.9:-51 BC031762:-51 ENSMUST00000109290.1:117 AK049857:117 AK141129:119 AF233775:143 AF233776:143 AF233777:143 AF233778:143 AF233779:143 AF233780:143 AF233781:143 AF233782:143 AF233783:143 AF233784:143 AF233785:143 AF233786:143 AF233787:143 AF233788:143 AF233789:143 AF233790:143 AF233791:143 AF233792:143 AF233793:143 AF233794:143 AF233795:143 AF233796:143 AF233797:143 AF233798:143 AF233799:143 AF233800:143 AF233801:143 AF233802:143 AK136889:154 AK047085:182 M62374:-197 AK034338:-203 ENSMUST00000070725.10:-376 NM_008073:-376 NM_001362656:-376 NM_001362655:-376 NM_177408:-376 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=-26 | |distance=-26 | ||
| − | |distance_to_tss= | + | |distance_to_tss=380 |
|end=42000481 | |end=42000481 | ||
|end_of_center_position=42000477 | |end_of_center_position=42000477 | ||
| Line 11: | Line 11: | ||
|gamma2= | |gamma2= | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
| − | |gene_alias=GABAA-R | + | |gene_alias=GABAA-R{{!}}Gabrg-2{{!}}gamma2 |
| − | |gene_description= | + | |gene_description=gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
|gene_id=14406 | |gene_id=14406 | ||
| − | |gene_name= | + | |gene_name=gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
|gene_source=MGI:95623 | |gene_source=MGI:95623 | ||
|gene_symbol=Gabrg2 | |gene_symbol=Gabrg2 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:95623 | |hgnc_mgi_id=MGI:95623 | ||
|nearest_ensembl=ENSMUSG00000020436 | |nearest_ensembl=ENSMUSG00000020436 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001362655 |
|nearest_refseq=NM_008073 | |nearest_refseq=NM_008073 | ||
|nearest_unigene=Mm.5309 | |nearest_unigene=Mm.5309 | ||
| − | |num_trans= | + | |num_trans=43 |
|species=mouse | |species=mouse | ||
|start=42000472 | |start=42000472 | ||
Revision as of 16:47, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 42000476 |
|---|---|
| End of the center position in the TSS region: | 42000477 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | M86572 |
|---|---|
| Distance: | -26 |
| Num_trans: | 43 |
| All_trans: | M86572:-26 ENSMUST00000070735.9:-51 BC031762:-51 ENSMUST00000109290.1:117 AK049857:117 AK141129:119 AF233775:143 AF233776:143 AF233777:143 AF233778:143 AF233779:143 AF233780:143 AF233781:143 AF233782:143 AF233783:143 AF233784:143 AF233785:143 AF233786:143 AF233787:143 AF233788:143 AF233789:143 AF233790:143 AF233791:143 AF233792:143 AF233793:143 AF233794:143 AF233795:143 AF233796:143 AF233797:143 AF233798:143 AF233799:143 AF233800:143 AF233801:143 AF233802:143 AK136889:154 AK047085:182 M62374:-197 AK034338:-203 ENSMUST00000070725.10:-376 NM_008073:-376 NM_001362656:-376 NM_001362655:-376 NM_177408:-376 |
TATA-Box annotation
| Distance to TSS: | 380 |
|---|---|
| Nearest PromoterID: | NM_001362655 |
| Entrez ID: | 14406 |
| Nearest Unigene: | Mm.5309 |
| Nearest Refseq: | NM_008073 |
| Nearest Ensembl: | ENSMUSG00000020436 |
| Gene Name: | gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
| Gene Alias: | GABAA-R|Gabrg-2|gamma2 |
| Gene Description: | gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
