Difference between revisions of "TSS:Mm 101707.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|Gabrg-2= | |Gabrg-2= | ||
| − | |all_trans=ENSMUST00000070735.9:7 BC031762:7 M86572:32 M62374:-86 AK034338:-92 | + | |all_trans=ENSMUST00000070735.9:7 BC031762:7 M86572:32 M62374:-86 AK034338:-92 ENSMUST00000109290.1:183 AK049857:183 AK141129:185 AF233775:209 AF233776:209 AF233777:209 AF233778:209 AF233779:209 AF233780:209 AF233781:209 AF233782:209 AF233783:209 AF233784:209 AF233785:209 AF233786:209 AF233787:209 AF233788:209 AF233789:209 AF233790:209 AF233791:209 AF233792:209 AF233793:209 AF233794:209 AF233795:209 AF233796:209 AF233797:209 AF233798:209 AF233799:209 AF233800:209 AF233801:209 AF233802:209 AK136889:220 AK047085:248 ENSMUST00000070725.10:-265 NM_008073:-265 NM_001362656:-265 NM_001362655:-265 NM_177408:-265 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=7 | |distance=7 | ||
| − | |distance_to_tss= | + | |distance_to_tss=292 |
|end=42000592 | |end=42000592 | ||
|end_of_center_position=42000566 | |end_of_center_position=42000566 | ||
| Line 11: | Line 11: | ||
|gamma2= | |gamma2= | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
| − | |gene_alias=GABAA-R | + | |gene_alias=GABAA-R{{!}}Gabrg-2{{!}}gamma2 |
| − | |gene_description= | + | |gene_description=gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
|gene_id=14406 | |gene_id=14406 | ||
| − | |gene_name= | + | |gene_name=gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
|gene_source=MGI:95623 | |gene_source=MGI:95623 | ||
|gene_symbol=Gabrg2 | |gene_symbol=Gabrg2 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:95623 | |hgnc_mgi_id=MGI:95623 | ||
|nearest_ensembl=ENSMUSG00000020436 | |nearest_ensembl=ENSMUSG00000020436 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001362655 |
|nearest_refseq=NM_008073 | |nearest_refseq=NM_008073 | ||
|nearest_unigene=Mm.5309 | |nearest_unigene=Mm.5309 | ||
| − | |num_trans= | + | |num_trans=43 |
|species=mouse | |species=mouse | ||
|start=42000538 | |start=42000538 | ||
Revision as of 16:47, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 42000565 |
|---|---|
| End of the center position in the TSS region: | 42000566 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000070735.9 BC031762 |
|---|---|
| Distance: | 7 |
| Num_trans: | 43 |
| All_trans: | ENSMUST00000070735.9:7 BC031762:7 M86572:32 M62374:-86 AK034338:-92 ENSMUST00000109290.1:183 AK049857:183 AK141129:185 AF233775:209 AF233776:209 AF233777:209 AF233778:209 AF233779:209 AF233780:209 AF233781:209 AF233782:209 AF233783:209 AF233784:209 AF233785:209 AF233786:209 AF233787:209 AF233788:209 AF233789:209 AF233790:209 AF233791:209 AF233792:209 AF233793:209 AF233794:209 AF233795:209 AF233796:209 AF233797:209 AF233798:209 AF233799:209 AF233800:209 AF233801:209 AF233802:209 AK136889:220 AK047085:248 ENSMUST00000070725.10:-265 NM_008073:-265 NM_001362656:-265 NM_001362655:-265 NM_177408:-265 |
TATA-Box annotation
| Distance to TSS: | 292 |
|---|---|
| Nearest PromoterID: | NM_001362655 |
| Entrez ID: | 14406 |
| Nearest Unigene: | Mm.5309 |
| Nearest Refseq: | NM_008073 |
| Nearest Ensembl: | ENSMUSG00000020436 |
| Gene Name: | gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
| Gene Alias: | GABAA-R|Gabrg-2|gamma2 |
| Gene Description: | gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
