Difference between revisions of "TSS:Mm 101709.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|Gabrg-2= | |Gabrg-2= | ||
| − | |all_trans=ENSMUST00000070725.10:-56 NM_008073: | + | |all_trans=ENSMUST00000070725.10:-56 NM_008073:-56 NM_001362656:-56 NM_001362655:-56 NM_177408:-56 AK034338:99 M62374:105 ENSMUST00000070735.9:251 BC031762:251 M86572:276 ENSMUST00000109290.1:427 AK049857:427 AK141129:429 AF233775:453 AF233776:453 AF233777:453 AF233778:453 AF233779:453 AF233780:453 AF233781:453 AF233782:453 AF233783:453 AF233784:453 AF233785:453 AF233786:453 AF233787:453 AF233788:453 AF233789:453 AF233790:453 AF233791:453 AF233792:453 AF233793:453 AF233794:453 AF233795:453 AF233796:453 AF233797:453 AF233798:453 AF233799:453 AF233800:453 AF233801:453 AF233802:453 AK136889:464 AK047085:492 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=-56 | |distance=-56 | ||
| − | |distance_to_tss= | + | |distance_to_tss=65 |
|end=42000801 | |end=42000801 | ||
|end_of_center_position=42000792 | |end_of_center_position=42000792 | ||
| Line 11: | Line 11: | ||
|gamma2= | |gamma2= | ||
|gc_percent=0.38806 | |gc_percent=0.38806 | ||
| − | |gene_alias=GABAA-R | + | |gene_alias=GABAA-R{{!}}Gabrg-2{{!}}gamma2 |
| − | |gene_description= | + | |gene_description=gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
|gene_id=14406 | |gene_id=14406 | ||
| − | |gene_name= | + | |gene_name=gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
|gene_source=MGI:95623 | |gene_source=MGI:95623 | ||
|gene_symbol=Gabrg2 | |gene_symbol=Gabrg2 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:95623 | |hgnc_mgi_id=MGI:95623 | ||
|nearest_ensembl=ENSMUSG00000020436 | |nearest_ensembl=ENSMUSG00000020436 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001362655 |
|nearest_refseq=NM_008073 | |nearest_refseq=NM_008073 | ||
|nearest_unigene=Mm.5309 | |nearest_unigene=Mm.5309 | ||
| − | |num_trans= | + | |num_trans=43 |
|species=mouse | |species=mouse | ||
|start=42000782 | |start=42000782 | ||
|start_of_center_position=42000791 | |start_of_center_position=42000791 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000070725.10 | + | |transcript_name=ENSMUST00000070725.10 NM_008073 NM_001362656 NM_001362655 NM_177408 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101709.1 | |tss_id=mm_101709.1 | ||
Revision as of 16:47, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 42000791 |
|---|---|
| End of the center position in the TSS region: | 42000792 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000070725.10 NM_008073 NM_001362656 NM_001362655 NM_177408 |
|---|---|
| Distance: | -56 |
| Num_trans: | 43 |
| All_trans: | ENSMUST00000070725.10:-56 NM_008073:-56 NM_001362656:-56 NM_001362655:-56 NM_177408:-56 AK034338:99 M62374:105 ENSMUST00000070735.9:251 BC031762:251 M86572:276 ENSMUST00000109290.1:427 AK049857:427 AK141129:429 AF233775:453 AF233776:453 AF233777:453 AF233778:453 AF233779:453 AF233780:453 AF233781:453 AF233782:453 AF233783:453 AF233784:453 AF233785:453 AF233786:453 AF233787:453 AF233788:453 AF233789:453 AF233790:453 AF233791:453 AF233792:453 AF233793:453 AF233794:453 AF233795:453 AF233796:453 AF233797:453 AF233798:453 AF233799:453 AF233800:453 AF233801:453 AF233802:453 AK136889:464 AK047085:492 |
TATA-Box annotation
| Distance to TSS: | 65 |
|---|---|
| Nearest PromoterID: | NM_001362655 |
| Entrez ID: | 14406 |
| Nearest Unigene: | Mm.5309 |
| Nearest Refseq: | NM_008073 |
| Nearest Ensembl: | ENSMUSG00000020436 |
| Gene Name: | gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
| Gene Alias: | GABAA-R|Gabrg-2|gamma2 |
| Gene Description: | gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.38806 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
