Difference between revisions of "TSS:Mm 101710.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|Gabrg-2= | |Gabrg-2= | ||
| − | |all_trans=ENSMUST00000070725.10:0 NM_008073: | + | |all_trans=ENSMUST00000070725.10:0 NM_008073:0 NM_001362656:0 NM_001362655:0 NM_177408:0 AK034338:151 M62374:157 ENSMUST00000070735.9:303 BC031762:303 M86572:328 ENSMUST00000109290.1:479 AK049857:479 AK141129:481 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=6 |
|end=42000867 | |end=42000867 | ||
|end_of_center_position=42000851 | |end_of_center_position=42000851 | ||
| Line 11: | Line 11: | ||
|gamma2= | |gamma2= | ||
|gc_percent=0.432836 | |gc_percent=0.432836 | ||
| − | |gene_alias=GABAA-R | + | |gene_alias=GABAA-R{{!}}Gabrg-2{{!}}gamma2 |
| − | |gene_description= | + | |gene_description=gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
|gene_id=14406 | |gene_id=14406 | ||
| − | |gene_name= | + | |gene_name=gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
|gene_source=MGI:95623 | |gene_source=MGI:95623 | ||
|gene_symbol=Gabrg2 | |gene_symbol=Gabrg2 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:95623 | |hgnc_mgi_id=MGI:95623 | ||
|nearest_ensembl=ENSMUSG00000020436 | |nearest_ensembl=ENSMUSG00000020436 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001362655 |
|nearest_refseq=NM_008073 | |nearest_refseq=NM_008073 | ||
|nearest_unigene=Mm.5309 | |nearest_unigene=Mm.5309 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=mouse | |species=mouse | ||
|start=42000834 | |start=42000834 | ||
|start_of_center_position=42000850 | |start_of_center_position=42000850 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000070725.10 | + | |transcript_name=ENSMUST00000070725.10 NM_008073 NM_001362656 NM_001362655 NM_177408 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101710.1 | |tss_id=mm_101710.1 | ||
Revision as of 16:47, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 42000850 |
|---|---|
| End of the center position in the TSS region: | 42000851 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000070725.10 NM_008073 NM_001362656 NM_001362655 NM_177408 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENSMUST00000070725.10:0 NM_008073:0 NM_001362656:0 NM_001362655:0 NM_177408:0 AK034338:151 M62374:157 ENSMUST00000070735.9:303 BC031762:303 M86572:328 ENSMUST00000109290.1:479 AK049857:479 AK141129:481 |
TATA-Box annotation
| Distance to TSS: | 6 |
|---|---|
| Nearest PromoterID: | NM_001362655 |
| Entrez ID: | 14406 |
| Nearest Unigene: | Mm.5309 |
| Nearest Refseq: | NM_008073 |
| Nearest Ensembl: | ENSMUSG00000020436 |
| Gene Name: | gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
| Gene Alias: | GABAA-R|Gabrg-2|gamma2 |
| Gene Description: | gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.432836 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
