Difference between revisions of "TSS:Mm 101713.1"
From referenceTSS
(Created page with "{{TSSDetail |chr=chr11 |cpg_percent=0.02 |distance= |distance_to_tss=49232 |end=42133711 |entrez_id=14394 |gc_percent=0.457711 |gene_alias=Gabra-1 |gene_description="gamma-ami...") |
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|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=48500 |
|end=42133711 | |end=42133711 | ||
| + | |end_of_center_position=42133698 | ||
|entrez_id=14394 | |entrez_id=14394 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| − | |gene_alias=Gabra-1 | + | |gene_alias=GABAA-alpha1{{!}}GABAAR-alpha1{{!}}Gabra-1 |
| − | |gene_description= | + | |gene_description=gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1 |
|gene_name=Gabra1 | |gene_name=Gabra1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSMUSG00000010803 | |nearest_ensembl=ENSMUSG00000010803 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001359035 |
|nearest_refseq=NM_010250 | |nearest_refseq=NM_010250 | ||
|nearest_unigene=Mm.439668 | |nearest_unigene=Mm.439668 | ||
| Line 18: | Line 19: | ||
|species=mouse | |species=mouse | ||
|start=42133684 | |start=42133684 | ||
| + | |start_of_center_position=42133697 | ||
|strand=- | |strand=- | ||
|transcript_name= | |transcript_name= | ||
Latest revision as of 16:47, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 42133697 |
|---|---|
| End of the center position in the TSS region: | 42133698 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 48500 |
|---|---|
| Nearest PromoterID: | NM_001359035 |
| Entrez ID: | 14394 |
| Nearest Unigene: | Mm.439668 |
| Nearest Refseq: | NM_010250 |
| Nearest Ensembl: | ENSMUSG00000010803 |
| Gene Name: | Gabra1 |
| Gene Alias: | GABAA-alpha1|GABAAR-alpha1|Gabra-1 |
| Gene Description: | gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
