Difference between revisions of "TSS:Mm 101718.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=M86566:-19 AK039496:28 X61430:53 ENSMUST00000205546.1:77 ENSMUST00000207274.1:136 ENSMUST00000169305.2:-179 AK142450:-179 M63436:-317 BC132331:-325 BC137733:-328 AK020669:362 | + | |all_trans=M86566:-19 AK039496:28 NM_001359035:42 X61430:53 ENSMUST00000205546.1:77 ENSMUST00000207274.1:136 ENSMUST00000169305.2:-179 AK142450:-179 M63436:-317 BC132331:-325 BC137733:-328 AK020669:362 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=-19 | |distance=-19 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-62 |
|end=42182281 | |end=42182281 | ||
|end_of_center_position=42182261 | |end_of_center_position=42182261 | ||
|entrez_id=14394 | |entrez_id=14394 | ||
|gc_percent=0.676617 | |gc_percent=0.676617 | ||
| − | |gene_alias=Gabra-1 | + | |gene_alias=GABAA-alpha1{{!}}GABAAR-alpha1{{!}}Gabra-1 |
| − | |gene_description= | + | |gene_description=gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1 |
|gene_id=14394 | |gene_id=14394 | ||
| − | |gene_name= | + | |gene_name=gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1 |
|gene_source=MGI:95613 | |gene_source=MGI:95613 | ||
|gene_symbol=Gabra1 | |gene_symbol=Gabra1 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:95613 | |hgnc_mgi_id=MGI:95613 | ||
|nearest_ensembl=ENSMUSG00000010803 | |nearest_ensembl=ENSMUSG00000010803 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001359035 |
|nearest_refseq=NM_010250 | |nearest_refseq=NM_010250 | ||
|nearest_unigene=Mm.439668 | |nearest_unigene=Mm.439668 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=42182239 | |start=42182239 | ||
Revision as of 16:47, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 42182260 |
|---|---|
| End of the center position in the TSS region: | 42182261 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | M86566 |
|---|---|
| Distance: | -19 |
| Num_trans: | 12 |
| All_trans: | M86566:-19 AK039496:28 NM_001359035:42 X61430:53 ENSMUST00000205546.1:77 ENSMUST00000207274.1:136 ENSMUST00000169305.2:-179 AK142450:-179 M63436:-317 BC132331:-325 BC137733:-328 AK020669:362 |
TATA-Box annotation
| Distance to TSS: | -62 |
|---|---|
| Nearest PromoterID: | NM_001359035 |
| Entrez ID: | 14394 |
| Nearest Unigene: | Mm.439668 |
| Nearest Refseq: | NM_010250 |
| Nearest Ensembl: | ENSMUSG00000010803 |
| Gene Name: | gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1 |
| Gene Alias: | GABAA-alpha1|GABAAR-alpha1|Gabra-1 |
| Gene Description: | gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
