Difference between revisions of "TSS:Mm 101720.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=M86566:40 ENSMUST00000169305.2:-110 AK142450:-110 AK039496:128 X61430:153 ENSMUST00000205546.1:177 ENSMUST00000207274.1:236 M63436:-248 BC132331:-256 BC137733:-259 AK141596:-439 AK020669:462 | + | |all_trans=M86566:40 ENSMUST00000169305.2:-110 AK142450:-110 AK039496:128 NM_001359035:142 X61430:153 ENSMUST00000205546.1:177 ENSMUST00000207274.1:236 M63436:-248 BC132331:-256 BC137733:-259 AK141596:-439 AK020669:462 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
|distance=40 | |distance=40 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-147 |
|end=42182350 | |end=42182350 | ||
|end_of_center_position=42182345 | |end_of_center_position=42182345 | ||
|entrez_id=14394 | |entrez_id=14394 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=Gabra-1 | + | |gene_alias=GABAA-alpha1{{!}}GABAAR-alpha1{{!}}Gabra-1 |
| − | |gene_description= | + | |gene_description=gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1 |
|gene_id=14394 | |gene_id=14394 | ||
| − | |gene_name= | + | |gene_name=gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1 |
|gene_source=MGI:95613 | |gene_source=MGI:95613 | ||
|gene_symbol=Gabra1 | |gene_symbol=Gabra1 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:95613 | |hgnc_mgi_id=MGI:95613 | ||
|nearest_ensembl=ENSMUSG00000010803 | |nearest_ensembl=ENSMUSG00000010803 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001359035 |
|nearest_refseq=NM_010250 | |nearest_refseq=NM_010250 | ||
|nearest_unigene=Mm.439668 | |nearest_unigene=Mm.439668 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=mouse | |species=mouse | ||
|start=42182339 | |start=42182339 | ||
Revision as of 16:47, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 42182344 |
|---|---|
| End of the center position in the TSS region: | 42182345 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | M86566 |
|---|---|
| Distance: | 40 |
| Num_trans: | 13 |
| All_trans: | M86566:40 ENSMUST00000169305.2:-110 AK142450:-110 AK039496:128 NM_001359035:142 X61430:153 ENSMUST00000205546.1:177 ENSMUST00000207274.1:236 M63436:-248 BC132331:-256 BC137733:-259 AK141596:-439 AK020669:462 |
TATA-Box annotation
| Distance to TSS: | -147 |
|---|---|
| Nearest PromoterID: | NM_001359035 |
| Entrez ID: | 14394 |
| Nearest Unigene: | Mm.439668 |
| Nearest Refseq: | NM_010250 |
| Nearest Ensembl: | ENSMUSG00000010803 |
| Gene Name: | gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1 |
| Gene Alias: | GABAA-alpha1|GABAAR-alpha1|Gabra-1 |
| Gene Description: | gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
