Difference between revisions of "TSS:Mm 101731.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|Gabra-6= | |Gabra-6= | ||
| − | |all_trans=ENSMUST00000109286.3:3 NM_008068:3 NM_001099641:3 | + | |all_trans=ENSMUST00000109286.3:3 NM_008068:3 NM_001099641:3 NM_001359049:3 ENSMUST00000155218.8:24 AK135145:24 AK137331:24 ENSMUST00000020703.12:26 X51986:67 BC145158:285 BC145702:285 AF256197:307 AF256198:307 |
|alpha6= | |alpha6= | ||
|chr=chr11 | |chr=chr11 | ||
| Line 11: | Line 11: | ||
|entrez_id=14399 | |entrez_id=14399 | ||
|gc_percent=0.437811 | |gc_percent=0.437811 | ||
| − | |gene_alias=GABA-ARalpha6 | + | |gene_alias=GABA-ARalpha6{{!}}Gabra-6{{!}}alpha6 |
| − | |gene_description= | + | |gene_description=gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6 |
|gene_id=14399 | |gene_id=14399 | ||
| − | |gene_name= | + | |gene_name=gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6 |
|gene_source=MGI:95618 | |gene_source=MGI:95618 | ||
|gene_symbol=Gabra6 | |gene_symbol=Gabra6 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:95618 | |hgnc_mgi_id=MGI:95618 | ||
|nearest_ensembl=ENSMUSG00000020428 | |nearest_ensembl=ENSMUSG00000020428 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_008068 |
|nearest_refseq=NM_008068 | |nearest_refseq=NM_008068 | ||
|nearest_unigene=Mm.4915 | |nearest_unigene=Mm.4915 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=mouse | |species=mouse | ||
|start=42321074 | |start=42321074 | ||
|start_of_center_position=42321078 | |start_of_center_position=42321078 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000109286.3 NM_008068 NM_001099641 | + | |transcript_name=ENSMUST00000109286.3 NM_008068 NM_001099641 NM_001359049 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101731.1 | |tss_id=mm_101731.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=P16305 | + | |uniprot_id=P16305 |
}} | }} | ||
Revision as of 16:47, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 42321078 |
|---|---|
| End of the center position in the TSS region: | 42321079 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000109286.3 NM_008068 NM_001099641 NM_001359049 |
|---|---|
| Distance: | 3 |
| Num_trans: | 13 |
| All_trans: | ENSMUST00000109286.3:3 NM_008068:3 NM_001099641:3 NM_001359049:3 ENSMUST00000155218.8:24 AK135145:24 AK137331:24 ENSMUST00000020703.12:26 X51986:67 BC145158:285 BC145702:285 AF256197:307 AF256198:307 |
TATA-Box annotation
| Distance to TSS: | -7 |
|---|---|
| Nearest PromoterID: | NM_008068 |
| Entrez ID: | 14399 |
| Nearest Unigene: | Mm.4915 |
| Nearest Refseq: | NM_008068 |
| Nearest Ensembl: | ENSMUSG00000020428 |
| Gene Name: | gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6 |
| Gene Alias: | GABA-ARalpha6|Gabra-6|alpha6 |
| Gene Description: | gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.437811 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
