Difference between revisions of "TSS:Mm 10176.1"
From referenceTSS
| Line 6: | Line 6: | ||
|Gm13190= | |Gm13190= | ||
|OTTMUSG00000010806= | |OTTMUSG00000010806= | ||
| − | |all_trans=AK196650:134 AK198798:134 AK171532:-225 ENSMUST00000142452.1:-276 AK029073:-276 ENSMUST00000176828.7:-295 AK148414:-295 ENSMUST00000153160.7:-297 NM_001177844 | + | |all_trans=AK196650:134 AK198798:134 AK171532:-225 ENSMUST00000142452.1:-276 AK029073:-276 ENSMUST00000176828.7:-295 AK148414:-295 ENSMUST00000153160.7:-297 NM_001177844:-297 AK077327:-297 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| Line 15: | Line 15: | ||
|entrez_id=209630 | |entrez_id=209630 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
| − | |gene_alias=2700017I06Rik | + | |gene_alias=2700017I06Rik{{!}}5330420J21{{!}}AI594879{{!}}C230040M21Rik{{!}}Frmd4{{!}}Gm13190{{!}}mKIAA1294 |
|gene_description=FERM domain containing 4A | |gene_description=FERM domain containing 4A | ||
|gene_id=209630 | |gene_id=209630 | ||
| Line 29: | Line 29: | ||
|nearest_refseq=NM_172475 | |nearest_refseq=NM_172475 | ||
|nearest_unigene=Mm.37932 | |nearest_unigene=Mm.37932 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=mouse | |species=mouse | ||
|start=4560050 | |start=4560050 | ||
|start_of_center_position=4560056 | |start_of_center_position=4560056 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=48(GCCTTGATAAGG,-,0.00) |
|transcript_name=AK196650 AK198798 | |transcript_name=AK196650 AK198798 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 16:48, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 4560056 |
|---|---|
| End of the center position in the TSS region: | 4560057 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK196650 AK198798 |
|---|---|
| Distance: | 134 |
| Num_trans: | 10 |
| All_trans: | AK196650:134 AK198798:134 AK171532:-225 ENSMUST00000142452.1:-276 AK029073:-276 ENSMUST00000176828.7:-295 AK148414:-295 ENSMUST00000153160.7:-297 NM_001177844:-297 AK077327:-297 |
TATA-Box annotation
| Distance to TSS: | 303 |
|---|---|
| Nearest PromoterID: | NM_001177844 |
| Entrez ID: | 209630 |
| Nearest Unigene: | Mm.37932 |
| Nearest Refseq: | NM_172475 |
| Nearest Ensembl: | ENSMUSG00000026657 |
| Gene Name: | FERM domain containing 4A |
| Gene Alias: | 2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294 |
| Gene Description: | FERM domain containing 4A |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 48(GCCTTGATAAGG,-,0.00) |
