Difference between revisions of "TSS:Mm 101765.1"
From referenceTSS
| Line 2: | Line 2: | ||
|C79328= | |C79328= | ||
|TPR1= | |TPR1= | ||
| − | |all_trans=ENSMUST00000109278.7:0 ENSMUST00000048578.2:0 ENSMUST00000147984.1:0 NM_133795 | + | |all_trans=ENSMUST00000109278.7:0 ENSMUST00000048578.2:0 ENSMUST00000147984.1:0 NM_133795:0 AK077715:0 AK166431:0 BC010236:0 AK170032:0 AK170230:0 AK019021:0 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=19 |
|end=43748015 | |end=43748015 | ||
|end_of_center_position=43747990 | |end_of_center_position=43747990 | ||
|entrez_id=66827 | |entrez_id=66827 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
| − | |gene_alias=4833412C19Rik | + | |gene_alias=4833412C19Rik{{!}}C79328{{!}}TPR1 |
|gene_description=tetratricopeptide repeat domain 1 | |gene_description=tetratricopeptide repeat domain 1 | ||
|gene_id=66827 | |gene_id=66827 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_133795 | |nearest_refseq=NM_133795 | ||
|nearest_unigene=Mm.271974 | |nearest_unigene=Mm.271974 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=mouse | |species=mouse | ||
|start=43747963 | |start=43747963 | ||
|start_of_center_position=43747989 | |start_of_center_position=43747989 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000109278.7 ENSMUST00000048578.2 ENSMUST00000147984.1 NM_133795 | + | |transcript_name=ENSMUST00000109278.7 ENSMUST00000048578.2 ENSMUST00000147984.1 NM_133795 AK077715 AK166431 BC010236 AK170032 AK170230 AK019021 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101765.1 | |tss_id=mm_101765.1 | ||
Revision as of 16:48, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 43747989 |
|---|---|
| End of the center position in the TSS region: | 43747990 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000109278.7 ENSMUST00000048578.2 ENSMUST00000147984.1 NM_133795 AK077715 AK166431 BC010236 AK170032 AK170230 AK019021 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10 |
| All_trans: | ENSMUST00000109278.7:0 ENSMUST00000048578.2:0 ENSMUST00000147984.1:0 NM_133795:0 AK077715:0 AK166431:0 BC010236:0 AK170032:0 AK170230:0 AK019021:0 |
TATA-Box annotation
| Distance to TSS: | 19 |
|---|---|
| Nearest PromoterID: | NM_133795 |
| Entrez ID: | 66827 |
| Nearest Unigene: | Mm.271974 |
| Nearest Refseq: | NM_133795 |
| Nearest Ensembl: | ENSMUSG00000041278 |
| Gene Name: | tetratricopeptide repeat domain 1 |
| Gene Alias: | 4833412C19Rik|C79328|TPR1 |
| Gene Description: | tetratricopeptide repeat domain 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
