Difference between revisions of "TSS:Mm 101768.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NM_007416 | + | |all_trans=NM_007416:-29 AK139448:-29 ENSMUST00000124306.1:120 ENSMUST00000167574.1:120 AK043877:120 BC138653:245 BC138654:245 Y12738:-343 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
|gene_alias=[a]1b | |gene_alias=[a]1b | ||
| − | |gene_description= | + | |gene_description=adrenergic receptor, alpha 1b |
|gene_id=11548 | |gene_id=11548 | ||
| − | |gene_name= | + | |gene_name=adrenergic receptor, alpha 1b |
|gene_source=MGI:104774 | |gene_source=MGI:104774 | ||
|gene_symbol=Adra1b | |gene_symbol=Adra1b | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_007416 | |nearest_refseq=NM_007416 | ||
|nearest_unigene=Mm.39086 | |nearest_unigene=Mm.39086 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=mouse | |species=mouse | ||
|start=43836451 | |start=43836451 | ||
|start_of_center_position=43836455 | |start_of_center_position=43836455 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_007416 | + | |transcript_name=NM_007416 AK139448 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101768.1 | |tss_id=mm_101768.1 | ||
Revision as of 16:48, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 43836455 |
|---|---|
| End of the center position in the TSS region: | 43836456 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NM_007416 AK139448 |
|---|---|
| Distance: | -29 |
| Num_trans: | 8 |
| All_trans: | NM_007416:-29 AK139448:-29 ENSMUST00000124306.1:120 ENSMUST00000167574.1:120 AK043877:120 BC138653:245 BC138654:245 Y12738:-343 |
TATA-Box annotation
| Distance to TSS: | 33 |
|---|---|
| Nearest PromoterID: | NM_007416 |
| Entrez ID: | 11548 |
| Nearest Unigene: | Mm.39086 |
| Nearest Refseq: | NM_007416 |
| Nearest Ensembl: | ENSMUSG00000050541 |
| Gene Name: | adrenergic receptor, alpha 1b |
| Gene Alias: | [a]1b |
| Gene Description: | adrenergic receptor, alpha 1b |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
