Difference between revisions of "TSS:Mm 101783.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|AV079530= | |AV079530= | ||
| − | |all_trans=ENSMUST00000129820.7:0 ENSMUST00000062458.5:0 NM_028185 | + | |all_trans=ENSMUST00000129820.7:0 ENSMUST00000062458.5:0 NM_028185:0 AK143661:0 AK082292:0 BC094286:0 AF514309:0 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| Line 10: | Line 10: | ||
|entrez_id=72290 | |entrez_id=72290 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
| − | |gene_alias=2210404M20Rik | + | |gene_alias=2210404M20Rik{{!}}AV079530 |
|gene_description=U7 snRNP-specific Sm-like protein LSM11 | |gene_description=U7 snRNP-specific Sm-like protein LSM11 | ||
|gene_id=72290 | |gene_id=72290 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_028185 | |nearest_refseq=NM_028185 | ||
|nearest_unigene=Mm.249827 | |nearest_unigene=Mm.249827 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=mouse | |species=mouse | ||
|start=45944910 | |start=45944910 | ||
|start_of_center_position=45944935 | |start_of_center_position=45944935 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000129820.7 ENSMUST00000062458.5 NM_028185 | + | |transcript_name=ENSMUST00000129820.7 ENSMUST00000062458.5 NM_028185 AK143661 AK082292 BC094286 AF514309 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101783.1 | |tss_id=mm_101783.1 | ||
Revision as of 16:48, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 45944935 |
|---|---|
| End of the center position in the TSS region: | 45944936 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000129820.7 ENSMUST00000062458.5 NM_028185 AK143661 AK082292 BC094286 AF514309 |
|---|---|
| Distance: | 0 |
| Num_trans: | 7 |
| All_trans: | ENSMUST00000129820.7:0 ENSMUST00000062458.5:0 NM_028185:0 AK143661:0 AK082292:0 BC094286:0 AF514309:0 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_028185 |
| Entrez ID: | 72290 |
| Nearest Unigene: | Mm.249827 |
| Nearest Refseq: | NM_028185 |
| Nearest Ensembl: | ENSMUSG00000044847 |
| Gene Name: | U7 snRNP-specific Sm-like protein LSM11 |
| Gene Alias: | 2210404M20Rik|AV079530 |
| Gene Description: | U7 snRNP-specific Sm-like protein LSM11 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
