Difference between revisions of "TSS:Mm 101784.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000109254.1:-6 NM_001290737 | + | |all_trans=ENSMUST00000109254.1:-6 NM_001290737:-6 AK016076:-6 ENSMUST00000133851.1:8 AK007233:8 ENSMUST00000131182.1:-301 BC092541:-301 AK017532:-303 BC115560:-309 BC115561:-309 ENSMUST00000011398.12:-312 AK010876:-312 NM_001080969:-321 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001080969 | |nearest_refseq=NM_001080969 | ||
|nearest_unigene=Mm.269083 | |nearest_unigene=Mm.269083 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=mouse | |species=mouse | ||
|start=45955164 | |start=45955164 | ||
|start_of_center_position=45955173 | |start_of_center_position=45955173 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=36(ATATTTAAAAGG,-,0.00) |
| − | |transcript_name=ENSMUST00000109254.1 NM_001290737 | + | |transcript_name=ENSMUST00000109254.1 NM_001290737 AK016076 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101784.1 | |tss_id=mm_101784.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q9CQT0 | + | |uniprot_id=Q9CQT0 |
}} | }} | ||
Revision as of 16:48, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 45955173 |
|---|---|
| End of the center position in the TSS region: | 45955174 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000109254.1 NM_001290737 AK016076 |
|---|---|
| Distance: | -6 |
| Num_trans: | 13 |
| All_trans: | ENSMUST00000109254.1:-6 NM_001290737:-6 AK016076:-6 ENSMUST00000133851.1:8 AK007233:8 ENSMUST00000131182.1:-301 BC092541:-301 AK017532:-303 BC115560:-309 BC115561:-309 ENSMUST00000011398.12:-312 AK010876:-312 NM_001080969:-321 |
TATA-Box annotation
| Distance to TSS: | 15 |
|---|---|
| Nearest PromoterID: | NM_001290737 |
| Entrez ID: | 66628 |
| Nearest Unigene: | Mm.269083 |
| Nearest Refseq: | NM_001080969 |
| Nearest Ensembl: | ENSMUSG00000011254 |
| Gene Name: | tRNA-histidine guanylyltransferase 1-like (S. cerevisiae) |
| Gene Alias: | - |
| Gene Description: | tRNA-histidine guanylyltransferase 1-like (S. cerevisiae) |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 36(ATATTTAAAAGG,-,0.00) |
