Difference between revisions of "TSS:Mm 101785.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000109254.1:0 NM_001290737 | + | |all_trans=ENSMUST00000109254.1:0 NM_001290737:0 AK016076:0 ENSMUST00000133851.1:27 AK007233:27 ENSMUST00000131182.1:-290 BC092541:-290 AK017532:-292 BC115560:-298 BC115561:-298 ENSMUST00000011398.12:-301 AK010876:-301 NM_001080969:-310 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001080969 | |nearest_refseq=NM_001080969 | ||
|nearest_unigene=Mm.269083 | |nearest_unigene=Mm.269083 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=mouse | |species=mouse | ||
|start=45955183 | |start=45955183 | ||
|start_of_center_position=45955188 | |start_of_center_position=45955188 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=51(ATATTTAAAAGG,-,0.00) |
| − | |transcript_name=ENSMUST00000109254.1 NM_001290737 | + | |transcript_name=ENSMUST00000109254.1 NM_001290737 AK016076 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101785.1 | |tss_id=mm_101785.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q9CQT0 | + | |uniprot_id=Q9CQT0 |
}} | }} | ||
Revision as of 16:48, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 45955188 |
|---|---|
| End of the center position in the TSS region: | 45955189 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000109254.1 NM_001290737 AK016076 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENSMUST00000109254.1:0 NM_001290737:0 AK016076:0 ENSMUST00000133851.1:27 AK007233:27 ENSMUST00000131182.1:-290 BC092541:-290 AK017532:-292 BC115560:-298 BC115561:-298 ENSMUST00000011398.12:-301 AK010876:-301 NM_001080969:-310 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_001290737 |
| Entrez ID: | 66628 |
| Nearest Unigene: | Mm.269083 |
| Nearest Refseq: | NM_001080969 |
| Nearest Ensembl: | ENSMUSG00000011254 |
| Gene Name: | tRNA-histidine guanylyltransferase 1-like (S. cerevisiae) |
| Gene Alias: | - |
| Gene Description: | tRNA-histidine guanylyltransferase 1-like (S. cerevisiae) |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 51(ATATTTAAAAGG,-,0.00) |
