Difference between revisions of "TSS:Mm 115923.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK088581:-11 | + | |H1D= |
| + | |H1f3= | ||
| + | |H1s-4= | ||
| + | |all_trans=AK088581:-11 LF199448:-12 MA435025:-12 | ||
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 6: | Line 9: | ||
|distance_to_tss=1087 | |distance_to_tss=1087 | ||
|end=23556123 | |end=23556123 | ||
| + | |end_of_center_position=23556119 | ||
|entrez_id=14957 | |entrez_id=14957 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
| − | |gene_alias=H1.3 | + | |gene_alias=H1.3{{!}}H1D{{!}}H1f3{{!}}H1s-4 |
| − | |gene_description= | + | |gene_description=histone cluster 1, H1d |
|gene_id=100034673 | |gene_id=100034673 | ||
| − | |gene_name= | + | |gene_name=Hist1h1d |
|gene_source=EntrezGene:100034673 | |gene_source=EntrezGene:100034673 | ||
|gene_symbol=E430020m11rik | |gene_symbol=E430020m11rik | ||
| Line 21: | Line 25: | ||
|nearest_refseq=NM_145713 | |nearest_refseq=NM_145713 | ||
|nearest_unigene=Mm.247046 | |nearest_unigene=Mm.247046 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=mouse | |species=mouse | ||
|start=23556114 | |start=23556114 | ||
| + | |start_of_center_position=23556118 | ||
|strand=- | |strand=- | ||
|transcript_name=AK088581 | |transcript_name=AK088581 | ||
Latest revision as of 22:19, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 23556118 |
|---|---|
| End of the center position in the TSS region: | 23556119 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK088581 |
|---|---|
| Distance: | -11 |
| Num_trans: | 3 |
| All_trans: | AK088581:-11 LF199448:-12 MA435025:-12 |
TATA-Box annotation
| Distance to TSS: | 1087 |
|---|---|
| Nearest PromoterID: | NM_145713 |
| Entrez ID: | 14957 |
| Nearest Unigene: | Mm.247046 |
| Nearest Refseq: | NM_145713 |
| Nearest Ensembl: | ENSMUSG00000052565 |
| Gene Name: | Hist1h1d |
| Gene Alias: | H1.3|H1D|H1f3|H1s-4 |
| Gene Description: | histone cluster 1, H1d |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
