Difference between revisions of "TSS:Mm 119397.1"
From referenceTSS
| Line 2: | Line 2: | ||
|MBP-A= | |MBP-A= | ||
|S-MBP= | |S-MBP= | ||
| − | |all_trans= | + | |all_trans=ENSMUST00000225792.1:0 ENSMUST00000047095.3:0 NM_010775:0 S42292:0 AK034788:0 BC012245:0 BC021762:0 D11441:0 |
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| Line 11: | Line 11: | ||
|entrez_id=17194 | |entrez_id=17194 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
| − | |gene_alias=MBL-A | + | |gene_alias=MBL-A{{!}}MBP-A{{!}}S-MBP |
|gene_description=mannose-binding lectin (protein A) 1 | |gene_description=mannose-binding lectin (protein A) 1 | ||
|gene_id=17194 | |gene_id=17194 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_010775 | |nearest_refseq=NM_010775 | ||
|nearest_unigene=Mm.281805 | |nearest_unigene=Mm.281805 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=mouse | |species=mouse | ||
|start=41151442 | |start=41151442 | ||
|start_of_center_position=41151477 | |start_of_center_position=41151477 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000047095. | + | |transcript_name=ENSMUST00000225792.1 ENSMUST00000047095.3 NM_010775 S42292 AK034788 BC012245 BC021762 D11441 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_119397.1 | |tss_id=mm_119397.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=P39039 | + | |uniprot_id=A0A2C9F2B6 P39039 |
}} | }} | ||
Revision as of 23:40, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 41151477 |
|---|---|
| End of the center position in the TSS region: | 41151478 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000225792.1 ENSMUST00000047095.3 NM_010775 S42292 AK034788 BC012245 BC021762 D11441 |
|---|---|
| Distance: | 0 |
| Num_trans: | 8 |
| All_trans: | ENSMUST00000225792.1:0 ENSMUST00000047095.3:0 NM_010775:0 S42292:0 AK034788:0 BC012245:0 BC021762:0 D11441:0 |
TATA-Box annotation
| Distance to TSS: | 21 |
|---|---|
| Nearest PromoterID: | NM_010775 |
| Entrez ID: | 17194 |
| Nearest Unigene: | Mm.281805 |
| Nearest Refseq: | NM_010775 |
| Nearest Ensembl: | ENSMUSG00000037780 |
| Gene Name: | mannose-binding lectin (protein A) 1 |
| Gene Alias: | MBL-A|MBP-A|S-MBP |
| Gene Description: | mannose-binding lectin (protein A) 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
