Difference between revisions of "TSS:Mm 123916.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK218926:-75 AK205709:-75 AK217202:-75 AK209176:-75 AK205546:-75 AK215843:-75 AK192783:-75 AK002796:-176 AK010248:406 | + | |Bri= |
| + | |Bri2= | ||
| + | |Bricd2b= | ||
| + | |D14Sel6= | ||
| + | |E25BMM= | ||
| + | |all_trans=LF241974:-49 MA477551:-49 AK218926:-75 AK205709:-75 AK217202:-75 AK209176:-75 AK205546:-75 AK215843:-75 AK192783:-75 LF241975:-121 MA477552:-121 AK002796:-176 AK010248:406 | ||
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance=- | + | |distance=-49 |
| − | |distance_to_tss= | + | |distance_to_tss=22344 |
|end=73362967 | |end=73362967 | ||
| + | |end_of_center_position=73362946 | ||
|entrez_id=16432 | |entrez_id=16432 | ||
|gc_percent=0.343284 | |gc_percent=0.343284 | ||
| − | |gene_alias=AI256040 | + | |gene_alias=AI256040{{!}}Bri{{!}}Bri2{{!}}Bricd2b{{!}}D14Sel6{{!}}E25BMM{{!}}imBRI2 |
|gene_description=integral membrane protein 2B | |gene_description=integral membrane protein 2B | ||
|gene_id=16432 | |gene_id=16432 | ||
| − | |gene_name= | + | |gene_name=Itm2b |
|gene_source=MGI:1309517 | |gene_source=MGI:1309517 | ||
|gene_symbol=Itm2b | |gene_symbol=Itm2b | ||
| Line 17: | Line 23: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1309517 | |hgnc_mgi_id=MGI:1309517 | ||
| + | |imBRI2= | ||
|nearest_ensembl=ENSMUSG00000022108 | |nearest_ensembl=ENSMUSG00000022108 | ||
|nearest_promoter_id=NM_008410 | |nearest_promoter_id=NM_008410 | ||
|nearest_refseq=NM_008410 | |nearest_refseq=NM_008410 | ||
|nearest_unigene=Mm.4266 | |nearest_unigene=Mm.4266 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=mouse | |species=mouse | ||
|start=73362923 | |start=73362923 | ||
| + | |start_of_center_position=73362945 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF241974 MA477551 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_123916.1 | |tss_id=mm_123916.1 | ||
Latest revision as of 01:25, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 73362945 |
|---|---|
| End of the center position in the TSS region: | 73362946 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF241974 MA477551 |
|---|---|
| Distance: | -49 |
| Num_trans: | 13 |
| All_trans: | LF241974:-49 MA477551:-49 AK218926:-75 AK205709:-75 AK217202:-75 AK209176:-75 AK205546:-75 AK215843:-75 AK192783:-75 LF241975:-121 MA477552:-121 AK002796:-176 AK010248:406 |
TATA-Box annotation
| Distance to TSS: | 22344 |
|---|---|
| Nearest PromoterID: | NM_008410 |
| Entrez ID: | 16432 |
| Nearest Unigene: | Mm.4266 |
| Nearest Refseq: | NM_008410 |
| Nearest Ensembl: | ENSMUSG00000022108 |
| Gene Name: | Itm2b |
| Gene Alias: | AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2 |
| Gene Description: | integral membrane protein 2B |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.343284 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
