Difference between revisions of "TSS:Mm 123921.1"
From referenceTSS
| Line 5: | Line 5: | ||
|D14Sel6= | |D14Sel6= | ||
|E25BMM= | |E25BMM= | ||
| − | |all_trans=AK210559:55 AK200695:57 AK008861:124 | + | |all_trans=LF200073:-1 MA435650:-1 LF241977:5 MA477554:5 AK210559:55 AK200695:57 LF241976:76 MA477553:76 AK008861:124 |
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=-1 |
| − | |distance_to_tss= | + | |distance_to_tss=20603 |
|end=73364693 | |end=73364693 | ||
|end_of_center_position=73364686 | |end_of_center_position=73364686 | ||
|entrez_id=16432 | |entrez_id=16432 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
| − | |gene_alias=AI256040 | + | |gene_alias=AI256040{{!}}Bri{{!}}Bri2{{!}}Bricd2b{{!}}D14Sel6{{!}}E25BMM{{!}}imBRI2 |
|gene_description=integral membrane protein 2B | |gene_description=integral membrane protein 2B | ||
|gene_id=16432 | |gene_id=16432 | ||
| − | |gene_name= | + | |gene_name=Itm2b |
|gene_source=MGI:1309517 | |gene_source=MGI:1309517 | ||
|gene_symbol=Itm2b | |gene_symbol=Itm2b | ||
| Line 28: | Line 28: | ||
|nearest_refseq=NM_008410 | |nearest_refseq=NM_008410 | ||
|nearest_unigene=Mm.4266 | |nearest_unigene=Mm.4266 | ||
| − | |num_trans= | + | |num_trans=9 |
|peakPage= | |peakPage= | ||
|peak_id=mm_123921.1 | |peak_id=mm_123921.1 | ||
| Line 36: | Line 36: | ||
|start_of_center_position=73364685 | |start_of_center_position=73364685 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-93(CTGTTTTAAAAG,-,0.00),-92(TGTTTTAAAAGC,-,0.00),-91(GTTTTAAAAGCA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=LF200073 MA435650 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_123921.1 | |tss_id=mm_123921.1 | ||
Latest revision as of 01:25, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 73364685 |
|---|---|
| End of the center position in the TSS region: | 73364686 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF200073 MA435650 |
|---|---|
| Distance: | -1 |
| Num_trans: | 9 |
| All_trans: | LF200073:-1 MA435650:-1 LF241977:5 MA477554:5 AK210559:55 AK200695:57 LF241976:76 MA477553:76 AK008861:124 |
TATA-Box annotation
| Distance to TSS: | 20603 |
|---|---|
| Nearest PromoterID: | NM_008410 |
| Entrez ID: | 16432 |
| Nearest Unigene: | Mm.4266 |
| Nearest Refseq: | NM_008410 |
| Nearest Ensembl: | ENSMUSG00000022108 |
| Gene Name: | Itm2b |
| Gene Alias: | AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2 |
| Gene Description: | integral membrane protein 2B |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -93(CTGTTTTAAAAG,-,0.00),-92(TGTTTTAAAAGC,-,0.00),-91(GTTTTAAAAGCA,+,0.00) |
