Difference between revisions of "TSS:Mm 135191.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000138796.1:0 ENSMUST00000146691.1:0 NM_001082546 | + | |all_trans=ENSMUST00000138796.1:0 ENSMUST00000146691.1:0 NM_001082546:-19 ENSMUST00000096089.2:-197 BC100530:-197 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=cystatin domain containing 5 |
|gene_id=100034684 | |gene_id=100034684 | ||
| − | |gene_name= | + | |gene_name=cystatin domain containing 5 |
|gene_source=MGI:3696883 | |gene_source=MGI:3696883 | ||
| − | |gene_symbol= | + | |gene_symbol=Cstdc5 |
| − | |gene_synonyms= | + | |gene_synonyms=BC100530 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:3696883 | |hgnc_mgi_id=MGI:3696883 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001082546 | |nearest_refseq=NM_001082546 | ||
|nearest_unigene=Mm.383561 | |nearest_unigene=Mm.383561 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=mouse | |species=mouse | ||
|start=36367534 | |start=36367534 | ||
|start_of_center_position=36367542 | |start_of_center_position=36367542 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-38(CCTTTAAAACCC,+,0.00) |
|transcript_name=ENSMUST00000138796.1 ENSMUST00000146691.1 | |transcript_name=ENSMUST00000138796.1 ENSMUST00000146691.1 | ||
|tss_classification=no | |tss_classification=no | ||
Revision as of 05:52, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 36367542 |
|---|---|
| End of the center position in the TSS region: | 36367543 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000138796.1 ENSMUST00000146691.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | ENSMUST00000138796.1:0 ENSMUST00000146691.1:0 NM_001082546:-19 ENSMUST00000096089.2:-197 BC100530:-197 |
TATA-Box annotation
| Distance to TSS: | 27 |
|---|---|
| Nearest PromoterID: | NM_001082546 |
| Entrez ID: | 100034684 |
| Nearest Unigene: | Mm.383561 |
| Nearest Refseq: | NM_001082546 |
| Nearest Ensembl: | ENSMUSG00000071561 |
| Gene Name: | cystatin domain containing 5 |
| Gene Alias: | - |
| Gene Description: | cystatin domain containing 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -38(CCTTTAAAACCC,+,0.00) |
