Difference between revisions of "TSS:Mm 152453.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK155789:-42 | + | |all_trans=ENSMUST00000235514.1:-42 AK155789:-42 |
|cI-1= | |cI-1= | ||
|chr=chr19 | |chr=chr19 | ||
| Line 10: | Line 10: | ||
|entrez_id=65221 | |entrez_id=65221 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| − | |gene_alias=Ci1 | + | |gene_alias=Ci1{{!}}cI-1 |
| − | |gene_description= | + | |gene_description=solute carrier family 15, member 3 |
|gene_id=100038352 | |gene_id=100038352 | ||
|gene_name=predicted gene 10802 | |gene_name=predicted gene 10802 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_023044 | |nearest_refseq=NM_023044 | ||
|nearest_unigene=Mm.27387 | |nearest_unigene=Mm.27387 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=mouse | |species=mouse | ||
|start=10841706 | |start=10841706 | ||
|start_of_center_position=10841713 | |start_of_center_position=10841713 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-81(ATGTTTAAAGGG,-,0.00) |
| − | |transcript_name=AK155789 | + | |transcript_name=ENSMUST00000235514.1 AK155789 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_152453.1 | |tss_id=mm_152453.1 | ||
Revision as of 12:33, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 10841713 |
|---|---|
| End of the center position in the TSS region: | 10841714 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000235514.1 AK155789 |
|---|---|
| Distance: | -42 |
| Num_trans: | 2 |
| All_trans: | ENSMUST00000235514.1:-42 AK155789:-42 |
TATA-Box annotation
| Distance to TSS: | -831 |
|---|---|
| Nearest PromoterID: | NM_023044 |
| Entrez ID: | 65221 |
| Nearest Unigene: | Mm.27387 |
| Nearest Refseq: | NM_023044 |
| Nearest Ensembl: | ENSMUSG00000024737 |
| Gene Name: | predicted gene 10802 |
| Gene Alias: | Ci1|cI-1 |
| Gene Description: | solute carrier family 15, member 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -81(ATGTTTAAAGGG,-,0.00) |
