Difference between revisions of "TSS:Mm 160808.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000109643.7:-27 ENSMUST00000166950.7:-27 ENSMUST00000178855.7:-27 NM_001109972:-27 NM_001109971:-27 NM_011343 | + | |all_trans=ENSMUST00000109643.7:-27 ENSMUST00000166950.7:-27 ENSMUST00000178855.7:-27 NM_001109972:-27 NM_001109971:-27 NM_011343:-27 ENSMUST00000109642.7:291 BC019129:306 BC019158:306 AK012644:310 ENSMUST00000138695.1:325 AK160390:333 AK012393:356 ENSMUST00000109641.1:388 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=SEC61, gamma subunit |
| − | |gene_id= | + | |gene_id=20335 |
| − | |gene_name= | + | |gene_name=SEC61, gamma subunit |
|gene_source=MGI:1202066 | |gene_source=MGI:1202066 | ||
|gene_symbol=Sec61g | |gene_symbol=Sec61g | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:1202066 | |hgnc_mgi_id=MGI:1202066 | ||
|nearest_ensembl=ENSMUSG00000078974 | |nearest_ensembl=ENSMUSG00000078974 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001109972 |
|nearest_refseq=NM_011343 | |nearest_refseq=NM_011343 | ||
|nearest_unigene=Mm.325350 | |nearest_unigene=Mm.325350 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=mouse | |species=mouse | ||
|start=16508456 | |start=16508456 | ||
|start_of_center_position=16508456 | |start_of_center_position=16508456 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000109643.7 ENSMUST00000166950.7 ENSMUST00000178855.7 NM_001109972 NM_001109971 NM_011343 | + | |transcript_name=ENSMUST00000109643.7 ENSMUST00000166950.7 ENSMUST00000178855.7 NM_001109972 NM_001109971 NM_011343 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_160808.1 | |tss_id=mm_160808.1 | ||
Revision as of 15:45, 20 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 16508456 |
|---|---|
| End of the center position in the TSS region: | 16508457 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000109643.7 ENSMUST00000166950.7 ENSMUST00000178855.7 NM_001109972 NM_001109971 NM_011343 |
|---|---|
| Distance: | -27 |
| Num_trans: | 14 |
| All_trans: | ENSMUST00000109643.7:-27 ENSMUST00000166950.7:-27 ENSMUST00000178855.7:-27 NM_001109972:-27 NM_001109971:-27 NM_011343:-27 ENSMUST00000109642.7:291 BC019129:306 BC019158:306 AK012644:310 ENSMUST00000138695.1:325 AK160390:333 AK012393:356 ENSMUST00000109641.1:388 |
TATA-Box annotation
| Distance to TSS: | 27 |
|---|---|
| Nearest PromoterID: | NM_001109972 |
| Entrez ID: | 20335 |
| Nearest Unigene: | Mm.325350 |
| Nearest Refseq: | NM_011343 |
| Nearest Ensembl: | ENSMUSG00000078974 |
| Gene Name: | SEC61, gamma subunit |
| Gene Alias: | - |
| Gene Description: | SEC61, gamma subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
