Difference between revisions of "TSS:Mm 160811.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NM_001252503:-22 NM_001290545:-22 NM_181411 | + | |all_trans=NM_001252503:-22 NM_001290545:-22 NM_181411:-22 AK030572:35 AK042681:40 BC052036:50 ENSMUST00000035350.11:-55 AK138793:57 ENSMUST00000177543.7:79 AK029681:79 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_181411 | |nearest_refseq=NM_181411 | ||
|nearest_unigene=Mm.356580 | |nearest_unigene=Mm.356580 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=mouse | |species=mouse | ||
|start=20741533 | |start=20741533 | ||
|start_of_center_position=20741533 | |start_of_center_position=20741533 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_001252503 NM_001290545 NM_181411 | + | |transcript_name=NM_001252503 NM_001290545 NM_181411 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_160811.1 | |tss_id=mm_160811.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q80WT5 |
}} | }} | ||
Revision as of 15:45, 20 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 20741533 |
|---|---|
| End of the center position in the TSS region: | 20741534 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001252503 NM_001290545 NM_181411 |
|---|---|
| Distance: | -22 |
| Num_trans: | 10 |
| All_trans: | NM_001252503:-22 NM_001290545:-22 NM_181411:-22 AK030572:35 AK042681:40 BC052036:50 ENSMUST00000035350.11:-55 AK138793:57 ENSMUST00000177543.7:79 AK029681:79 |
TATA-Box annotation
| Distance to TSS: | 22 |
|---|---|
| Nearest PromoterID: | NM_001290545 |
| Entrez ID: | 216549 |
| Nearest Unigene: | Mm.356580 |
| Nearest Refseq: | NM_181411 |
| Nearest Ensembl: | ENSMUSG00000049659 |
| Gene Name: | aftiphilin |
| Gene Alias: | - |
| Gene Description: | aftiphilin |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
