Difference between revisions of "TSS:Mm 163255.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Tse-1= | |Tse-1= | ||
|Tse1= | |Tse1= | ||
| − | |all_trans= | + | |all_trans=HQ412668:92 AK049832:159 AK150427:160 AK146380:164 AK158562:-184 NM_001373912:193 AK151124:193 AK153227:193 BC005697:209 ENSMUST00000106676.7:226 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
|distance=92 | |distance=92 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-514 |
|end=109650349 | |end=109650349 | ||
|end_of_center_position=109650348 | |end_of_center_position=109650348 | ||
|entrez_id=19084 | |entrez_id=19084 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
| − | |gene_alias=1300018C22Rik | + | |gene_alias=1300018C22Rik{{!}}RIalpha{{!}}Tse-1{{!}}Tse1 |
| − | |gene_description= | + | |gene_description=protein kinase, cAMP dependent regulatory, type I, alpha |
|gene_id=19084 | |gene_id=19084 | ||
| − | |gene_name= | + | |gene_name=protein kinase, cAMP dependent regulatory, type I, alpha |
|gene_source=MGI:104878 | |gene_source=MGI:104878 | ||
|gene_symbol=Prkar1a | |gene_symbol=Prkar1a | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=MGI:104878 | |hgnc_mgi_id=MGI:104878 | ||
|nearest_ensembl=ENSMUSG00000020612 | |nearest_ensembl=ENSMUSG00000020612 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001313975 |
|nearest_refseq=NM_021880 | |nearest_refseq=NM_021880 | ||
|nearest_unigene=Mm.30039 | |nearest_unigene=Mm.30039 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=mouse | |species=mouse | ||
|start=109650346 | |start=109650346 | ||
|start_of_center_position=109650347 | |start_of_center_position=109650347 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=HQ412668 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_163255.1 | |tss_id=mm_163255.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 16:40, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 109650347 |
|---|---|
| End of the center position in the TSS region: | 109650348 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | HQ412668 |
|---|---|
| Distance: | 92 |
| Num_trans: | 10 |
| All_trans: | HQ412668:92 AK049832:159 AK150427:160 AK146380:164 AK158562:-184 NM_001373912:193 AK151124:193 AK153227:193 BC005697:209 ENSMUST00000106676.7:226 |
TATA-Box annotation
| Distance to TSS: | -514 |
|---|---|
| Nearest PromoterID: | NM_001313975 |
| Entrez ID: | 19084 |
| Nearest Unigene: | Mm.30039 |
| Nearest Refseq: | NM_021880 |
| Nearest Ensembl: | ENSMUSG00000020612 |
| Gene Name: | protein kinase, cAMP dependent regulatory, type I, alpha |
| Gene Alias: | 1300018C22Rik|RIalpha|Tse-1|Tse1 |
| Gene Description: | protein kinase, cAMP dependent regulatory, type I, alpha |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
