Difference between revisions of "TSS:Mm 163256.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Tse-1= | |Tse-1= | ||
|Tse1= | |Tse1= | ||
| − | |all_trans=BC003461:-15 AK145860:-23 AK027916:-23 AK083383:-36 AK147188:-44 | + | |all_trans=BC003461:-15 AK145860:-23 AK027916:-23 AK083383:-36 AK147188:-44 NM_001373913:-56 AK005039:-56 AK053918:-56 AK145797:-56 AK051068:-56 ENSMUST00000049527.6:-84 NM_001313976:-143 NM_001313975:-143 NM_001362677:333 ENSMUST00000106676.7:-430 BC005697:-447 NM_001373912:-463 AK151124:-463 AK153227:-463 AK146380:-492 AK150427:-496 AK049832:-497 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
|distance=-15 | |distance=-15 | ||
| − | |distance_to_tss= | + | |distance_to_tss=145 |
|end=109651009 | |end=109651009 | ||
|end_of_center_position=109651007 | |end_of_center_position=109651007 | ||
|entrez_id=19084 | |entrez_id=19084 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| − | |gene_alias=1300018C22Rik | + | |gene_alias=1300018C22Rik{{!}}RIalpha{{!}}Tse-1{{!}}Tse1 |
| − | |gene_description= | + | |gene_description=protein kinase, cAMP dependent regulatory, type I, alpha |
|gene_id=19084 | |gene_id=19084 | ||
| − | |gene_name= | + | |gene_name=protein kinase, cAMP dependent regulatory, type I, alpha |
|gene_source=MGI:104878 | |gene_source=MGI:104878 | ||
|gene_symbol=Prkar1a | |gene_symbol=Prkar1a | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_021880 | |nearest_refseq=NM_021880 | ||
|nearest_unigene=Mm.30039 | |nearest_unigene=Mm.30039 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=mouse | |species=mouse | ||
|start=109651004 | |start=109651004 | ||
Revision as of 16:40, 20 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 109651006 |
|---|---|
| End of the center position in the TSS region: | 109651007 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC003461 |
|---|---|
| Distance: | -15 |
| Num_trans: | 22 |
| All_trans: | BC003461:-15 AK145860:-23 AK027916:-23 AK083383:-36 AK147188:-44 NM_001373913:-56 AK005039:-56 AK053918:-56 AK145797:-56 AK051068:-56 ENSMUST00000049527.6:-84 NM_001313976:-143 NM_001313975:-143 NM_001362677:333 ENSMUST00000106676.7:-430 BC005697:-447 NM_001373912:-463 AK151124:-463 AK153227:-463 AK146380:-492 AK150427:-496 AK049832:-497 |
TATA-Box annotation
| Distance to TSS: | 145 |
|---|---|
| Nearest PromoterID: | NM_001313976 |
| Entrez ID: | 19084 |
| Nearest Unigene: | Mm.30039 |
| Nearest Refseq: | NM_021880 |
| Nearest Ensembl: | ENSMUSG00000020612 |
| Gene Name: | protein kinase, cAMP dependent regulatory, type I, alpha |
| Gene Alias: | 1300018C22Rik|RIalpha|Tse-1|Tse1 |
| Gene Description: | protein kinase, cAMP dependent regulatory, type I, alpha |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
