Difference between revisions of "TSS:Mm 165122.1"
From referenceTSS
| Line 6: | Line 6: | ||
|Gm13190= | |Gm13190= | ||
|OTTMUSG00000010806= | |OTTMUSG00000010806= | ||
| − | |all_trans=ENSMUST00000138735.1:21 ENSMUST00000137809 | + | |all_trans=NM_001347086:-3 ENSMUST00000138735.1:21 ENSMUST00000137809.1:38 AK048013:38 ENSMUST00000177457.7:48 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=-3 |
|distance_to_tss=8 | |distance_to_tss=8 | ||
|end=4017696 | |end=4017696 | ||
| Line 15: | Line 15: | ||
|entrez_id=209630 | |entrez_id=209630 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| − | |gene_alias=2700017I06Rik | + | |gene_alias=2700017I06Rik{{!}}5330420J21{{!}}AI594879{{!}}C230040M21Rik{{!}}Frmd4{{!}}Gm13190{{!}}mKIAA1294 |
|gene_description=FERM domain containing 4A | |gene_description=FERM domain containing 4A | ||
|gene_id=209630 | |gene_id=209630 | ||
| Line 34: | Line 34: | ||
|start_of_center_position=4017690 | |start_of_center_position=4017690 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001347086 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_165122.1 | |tss_id=mm_165122.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=H3BIZ7 |
}} | }} | ||
Revision as of 17:23, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 4017690 |
|---|---|
| End of the center position in the TSS region: | 4017691 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001347086 |
|---|---|
| Distance: | -3 |
| Num_trans: | 5 |
| All_trans: | NM_001347086:-3 ENSMUST00000138735.1:21 ENSMUST00000137809.1:38 AK048013:38 ENSMUST00000177457.7:48 |
TATA-Box annotation
| Distance to TSS: | 8 |
|---|---|
| Nearest PromoterID: | NM_001347086 |
| Entrez ID: | 209630 |
| Nearest Unigene: | Mm.37932 |
| Nearest Refseq: | NM_172475 |
| Nearest Ensembl: | ENSMUSG00000026657 |
| Gene Name: | FERM domain containing 4A |
| Gene Alias: | 2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294 |
| Gene Description: | FERM domain containing 4A |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
