Difference between revisions of "TSS:Mm 168435.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000020721.14:-8 ENSMUST00000170588.7:-8 | + | |all_trans=ENSMUST00000020721.14:-8 ENSMUST00000170588.7:-8 NM_001284427:-8 NM_001284429:-8 NM_001159284:-8 NM_013870:-8 NM_001284428:-8 AK030932:-8 AK138898:-8 AK085412:28 ENSMUST00000154861.7:29 ENSMUST00000136243.1:30 AK166385:30 AK170516:30 ENSMUST00000151804.1:32 ENSMUST00000075118.9:42 AF064236:42 AJ010305:42 BC010599:48 BC066192:111 BC069836:111 BC069839:111 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
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|hgnc_mgi_id=MGI:1354727 | |hgnc_mgi_id=MGI:1354727 | ||
|nearest_ensembl=ENSMUSG00000020439 | |nearest_ensembl=ENSMUSG00000020439 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001284428 |
|nearest_refseq=NM_013870 | |nearest_refseq=NM_013870 | ||
|nearest_unigene=Mm.188516 | |nearest_unigene=Mm.188516 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=mouse | |species=mouse | ||
|start=3539280 | |start=3539280 | ||
|start_of_center_position=3539282 | |start_of_center_position=3539282 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000020721.14 ENSMUST00000170588.7 NM_013870 | + | |transcript_name=ENSMUST00000020721.14 ENSMUST00000170588.7 NM_001284427 NM_001284429 NM_001159284 NM_013870 NM_001284428 AK030932 AK138898 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_168435.1 | |tss_id=mm_168435.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q921U8 | + | |uniprot_id=Q921U8 |
}} | }} | ||
Revision as of 18:39, 20 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 3539282 |
|---|---|
| End of the center position in the TSS region: | 3539283 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000020721.14 ENSMUST00000170588.7 NM_001284427 NM_001284429 NM_001159284 NM_013870 NM_001284428 AK030932 AK138898 |
|---|---|
| Distance: | -8 |
| Num_trans: | 22 |
| All_trans: | ENSMUST00000020721.14:-8 ENSMUST00000170588.7:-8 NM_001284427:-8 NM_001284429:-8 NM_001159284:-8 NM_013870:-8 NM_001284428:-8 AK030932:-8 AK138898:-8 AK085412:28 ENSMUST00000154861.7:29 ENSMUST00000136243.1:30 AK166385:30 AK170516:30 ENSMUST00000151804.1:32 ENSMUST00000075118.9:42 AF064236:42 AJ010305:42 BC010599:48 BC066192:111 BC069836:111 BC069839:111 |
TATA-Box annotation
| Distance to TSS: | 10 |
|---|---|
| Nearest PromoterID: | NM_001284428 |
| Entrez ID: | 29856 |
| Nearest Unigene: | Mm.188516 |
| Nearest Refseq: | NM_013870 |
| Nearest Ensembl: | ENSMUSG00000020439 |
| Gene Name: | smoothelin |
| Gene Alias: | smsmo |
| Gene Description: | smoothelin |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
