Difference between revisions of "TSS:Mm 168461.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000130174.1:60 ENSMUST00000020689.9 | + | |all_trans=LF198354:58 MA433931:58 ENSMUST00000130174.1:60 ENSMUST00000020689.9:62 AK015939:62 ENSMUST00000109949.7:83 NM_029458:83 BC120781:83 BC120783:83 BC144842:83 LF225822:400 MA461399:400 ENSMUST00000109948.7:420 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=58 |
|distance_to_tss=-87 | |distance_to_tss=-87 | ||
|end=4441174 | |end=4441174 | ||
| + | |end_of_center_position=4441170 | ||
|entrez_id=75828 | |entrez_id=75828 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
| Line 11: | Line 12: | ||
|gene_description=HORMA domain containing 2 | |gene_description=HORMA domain containing 2 | ||
|gene_id=75828 | |gene_id=75828 | ||
| − | |gene_name= | + | |gene_name=Hormad2 |
|gene_source=MGI:1923078 | |gene_source=MGI:1923078 | ||
|gene_symbol=Hormad2 | |gene_symbol=Hormad2 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_029458 | |nearest_refseq=NM_029458 | ||
|nearest_unigene=Mm.159592 | |nearest_unigene=Mm.159592 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=mouse | |species=mouse | ||
|start=4441164 | |start=4441164 | ||
| + | |start_of_center_position=4441169 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF198354 MA433931 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_168461.1 | |tss_id=mm_168461.1 | ||
Latest revision as of 18:40, 20 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 4441169 |
|---|---|
| End of the center position in the TSS region: | 4441170 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | LF198354 MA433931 |
|---|---|
| Distance: | 58 |
| Num_trans: | 13 |
| All_trans: | LF198354:58 MA433931:58 ENSMUST00000130174.1:60 ENSMUST00000020689.9:62 AK015939:62 ENSMUST00000109949.7:83 NM_029458:83 BC120781:83 BC120783:83 BC144842:83 LF225822:400 MA461399:400 ENSMUST00000109948.7:420 |
TATA-Box annotation
| Distance to TSS: | -87 |
|---|---|
| Nearest PromoterID: | NM_029458 |
| Entrez ID: | 75828 |
| Nearest Unigene: | Mm.159592 |
| Nearest Refseq: | NM_029458 |
| Nearest Ensembl: | ENSMUSG00000020419 |
| Gene Name: | Hormad2 |
| Gene Alias: | 4930529M09Rik |
| Gene Description: | HORMA domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
