Difference between revisions of "TSS:Mm 43304.1"
From referenceTSS
| Line 2: | Line 2: | ||
|LIMK-1= | |LIMK-1= | ||
|Limk= | |Limk= | ||
| − | |all_trans=ENSMUST00000100641.2:-55 AK142429:-55 | + | |all_trans=ENSMUST00000100641.2:-55 AK142429:-55 NR_166474:-427 |
|chr=chr5 | |chr=chr5 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| Line 11: | Line 11: | ||
|entrez_id=16885 | |entrez_id=16885 | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
| − | |gene_alias=KIZ-1 | + | |gene_alias=KIZ-1{{!}}LIMK-1{{!}}Limk |
| − | |gene_description= | + | |gene_description=LIM-domain containing, protein kinase |
|gene_id=100038504 | |gene_id=100038504 | ||
|gene_name=predicted gene 10369 | |gene_name=predicted gene 10369 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:3642774 | |hgnc_mgi_id=MGI:3642774 | ||
|nearest_ensembl=ENSMUSG00000029674 | |nearest_ensembl=ENSMUSG00000029674 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_131247 |
|nearest_refseq=NM_010717 | |nearest_refseq=NM_010717 | ||
|nearest_unigene=Mm.15409 | |nearest_unigene=Mm.15409 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=mouse | |species=mouse | ||
|start=134676544 | |start=134676544 | ||
Revision as of 06:32, 21 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 134676553 |
|---|---|
| End of the center position in the TSS region: | 134676554 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000100641.2 AK142429 |
|---|---|
| Distance: | -55 |
| Num_trans: | 3 |
| All_trans: | ENSMUST00000100641.2:-55 AK142429:-55 NR_166474:-427 |
TATA-Box annotation
| Distance to TSS: | 1694 |
|---|---|
| Nearest PromoterID: | NR_131247 |
| Entrez ID: | 16885 |
| Nearest Unigene: | Mm.15409 |
| Nearest Refseq: | NM_010717 |
| Nearest Ensembl: | ENSMUSG00000029674 |
| Gene Name: | predicted gene 10369 |
| Gene Alias: | KIZ-1|LIMK-1|Limk |
| Gene Description: | LIM-domain containing, protein kinase |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
