Difference between revisions of "TSS:Mm 49105.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|OTTMUSG00000029336= | |OTTMUSG00000029336= | ||
| − | |all_trans=AK158918:0 EU711418:0 ENSMUST00000159335.7 | + | |all_trans=AK158918:0 EU711418:0 ENSMUST00000159335.7:-8 NM_001302353:-8 NM_001302354:-8 ENSMUST00000159378.7:38 ENSMUST00000162034.7:70 ENSMUST00000160705.7:116 ENSMUST00000159433.7:118 AK009885:118 ENSMUST00000161400.1:132 ENSMUST00000162564.6:138 AF374476:138 |
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=MGI:3840148 | |hgnc_mgi_id=MGI:3840148 | ||
|nearest_ensembl=ENSMUSG00000089862 | |nearest_ensembl=ENSMUSG00000089862 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001302354 |
|nearest_refseq=NM_001302353 | |nearest_refseq=NM_001302353 | ||
|nearest_unigene=Mm.446106 | |nearest_unigene=Mm.446106 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=mouse | |species=mouse | ||
|start=8259295 | |start=8259295 | ||
Revision as of 08:46, 21 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 8259303 |
|---|---|
| End of the center position in the TSS region: | 8259304 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK158918 EU711418 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | AK158918:0 EU711418:0 ENSMUST00000159335.7:-8 NM_001302353:-8 NM_001302354:-8 ENSMUST00000159378.7:38 ENSMUST00000162034.7:70 ENSMUST00000160705.7:116 ENSMUST00000159433.7:118 AK009885:118 ENSMUST00000161400.1:132 ENSMUST00000162564.6:138 AF374476:138 |
TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NM_001302354 |
| Entrez ID: | 100036521 |
| Nearest Unigene: | Mm.446106 |
| Nearest Refseq: | NM_001302353 |
| Nearest Ensembl: | ENSMUSG00000089862 |
| Gene Name: | UMAP1-MVP12 associated (UMA) domain containing 1 |
| Gene Alias: | Gm16039 |
| Gene Description: | UMAP1-MVP12 associated (UMA) domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
