Difference between revisions of "TSS:Mm 49106.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|OTTMUSG00000029336= | |OTTMUSG00000029336= | ||
| − | |all_trans=ENSMUST00000159378.7:8 EU711418:-21 AK158918:-31 ENSMUST00000159335.7:-40 ENSMUST00000162034.7: | + | |all_trans=ENSMUST00000159378.7:8 EU711418:-21 AK158918:-31 ENSMUST00000159335.7:-40 ENSMUST00000162034.7:40 NM_001302353:-40 NM_001302354:-40 ENSMUST00000160705.7:86 ENSMUST00000159433.7:88 AK009885:88 ENSMUST00000161400.1:102 ENSMUST00000162564.6:108 AF374476:108 |
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=MGI:3840148 | |hgnc_mgi_id=MGI:3840148 | ||
|nearest_ensembl=ENSMUSG00000089862 | |nearest_ensembl=ENSMUSG00000089862 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001302354 |
|nearest_refseq=NM_001302353 | |nearest_refseq=NM_001302353 | ||
|nearest_unigene=Mm.446106 | |nearest_unigene=Mm.446106 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=mouse | |species=mouse | ||
|start=8259327 | |start=8259327 | ||
Revision as of 08:46, 21 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 8259334 |
|---|---|
| End of the center position in the TSS region: | 8259335 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000159378.7 |
|---|---|
| Distance: | 8 |
| Num_trans: | 13 |
| All_trans: | ENSMUST00000159378.7:8 EU711418:-21 AK158918:-31 ENSMUST00000159335.7:-40 ENSMUST00000162034.7:40 NM_001302353:-40 NM_001302354:-40 ENSMUST00000160705.7:86 ENSMUST00000159433.7:88 AK009885:88 ENSMUST00000161400.1:102 ENSMUST00000162564.6:108 AF374476:108 |
TATA-Box annotation
| Distance to TSS: | 47 |
|---|---|
| Nearest PromoterID: | NM_001302354 |
| Entrez ID: | 100036521 |
| Nearest Unigene: | Mm.446106 |
| Nearest Refseq: | NM_001302353 |
| Nearest Ensembl: | ENSMUSG00000089862 |
| Gene Name: | UMAP1-MVP12 associated (UMA) domain containing 1 |
| Gene Alias: | Gm16039 |
| Gene Description: | UMAP1-MVP12 associated (UMA) domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
