Difference between revisions of "TSS:Mm 6398.1"
From referenceTSS
| Line 3: | Line 3: | ||
|IGFBP-5= | |IGFBP-5= | ||
|IGFBP-5P= | |IGFBP-5P= | ||
| − | |all_trans= | + | |all_trans=LF216477:75 MA452054:75 LF216476:294 MA452053:294 LF216479:-475 MA452056:-475 LF216474:486 MA452051:486 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance= | + | |distance=75 |
|distance_to_tss=13357 | |distance_to_tss=13357 | ||
|end=72861519 | |end=72861519 | ||
| Line 12: | Line 12: | ||
|entrez_id=16011 | |entrez_id=16011 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
| − | |gene_alias=AI256729 | + | |gene_alias=AI256729{{!}}AW208790{{!}}IGFBP-5{{!}}IGFBP-5P |
|gene_description=insulin-like growth factor binding protein 5 | |gene_description=insulin-like growth factor binding protein 5 | ||
|gene_id=16011 | |gene_id=16011 | ||
| − | |gene_name= | + | |gene_name=Igfbp5 |
|gene_source=MGI:96440 | |gene_source=MGI:96440 | ||
|gene_symbol=Igfbp5 | |gene_symbol=Igfbp5 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_010518 | |nearest_refseq=NM_010518 | ||
|nearest_unigene=Mm.405761 | |nearest_unigene=Mm.405761 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=mouse | |species=mouse | ||
|start=72861496 | |start=72861496 | ||
|start_of_center_position=72861507 | |start_of_center_position=72861507 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=24(GACTTTATAGGC,-,0.00) |
| − | |transcript_name= | + | |transcript_name=LF216477 MA452054 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_6398.1 | |tss_id=mm_6398.1 | ||
Latest revision as of 14:29, 21 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72861507 |
|---|---|
| End of the center position in the TSS region: | 72861508 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF216477 MA452054 |
|---|---|
| Distance: | 75 |
| Num_trans: | 8 |
| All_trans: | LF216477:75 MA452054:75 LF216476:294 MA452053:294 LF216479:-475 MA452056:-475 LF216474:486 MA452051:486 |
TATA-Box annotation
| Distance to TSS: | 13357 |
|---|---|
| Nearest PromoterID: | NM_010518 |
| Entrez ID: | 16011 |
| Nearest Unigene: | Mm.405761 |
| Nearest Refseq: | NM_010518 |
| Nearest Ensembl: | ENSMUSG00000026185 |
| Gene Name: | Igfbp5 |
| Gene Alias: | AI256729|AW208790|IGFBP-5|IGFBP-5P |
| Gene Description: | insulin-like growth factor binding protein 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 24(GACTTTATAGGC,-,0.00) |
