Difference between revisions of "TSS:Mm 6412.1"
From referenceTSS
| Line 3: | Line 3: | ||
|IGFBP-5= | |IGFBP-5= | ||
|IGFBP-5P= | |IGFBP-5P= | ||
| − | |all_trans=L12447:14 BC026805:234 ENSMUST00000137339.1:264 BC054812:264 NM_010518:-318 | + | |all_trans=L12447:14 LF203465:-86 MA439042:-86 BC026805:234 ENSMUST00000137339.1:264 BC054812:264 NM_010518:-318 LF204772:-318 MA440349:-318 BC057447:-318 X81583:336 ENSMUST00000027377.8:-337 AK142108:-337 LF192714:-368 MA428291:-368 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| Line 12: | Line 12: | ||
|entrez_id=16011 | |entrez_id=16011 | ||
|gc_percent=0.507463 | |gc_percent=0.507463 | ||
| − | |gene_alias=AI256729 | + | |gene_alias=AI256729{{!}}AW208790{{!}}IGFBP-5{{!}}IGFBP-5P |
|gene_description=insulin-like growth factor binding protein 5 | |gene_description=insulin-like growth factor binding protein 5 | ||
|gene_id=16011 | |gene_id=16011 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_010518 | |nearest_refseq=NM_010518 | ||
|nearest_unigene=Mm.405761 | |nearest_unigene=Mm.405761 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=mouse | |species=mouse | ||
|start=72874538 | |start=72874538 | ||
|start_of_center_position=72874542 | |start_of_center_position=72874542 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=37(CCTTTTCAAGGC,+,0.00) |
|transcript_name=L12447 | |transcript_name=L12447 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 14:32, 21 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72874542 |
|---|---|
| End of the center position in the TSS region: | 72874543 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | L12447 |
|---|---|
| Distance: | 14 |
| Num_trans: | 15 |
| All_trans: | L12447:14 LF203465:-86 MA439042:-86 BC026805:234 ENSMUST00000137339.1:264 BC054812:264 NM_010518:-318 LF204772:-318 MA440349:-318 BC057447:-318 X81583:336 ENSMUST00000027377.8:-337 AK142108:-337 LF192714:-368 MA428291:-368 |
TATA-Box annotation
| Distance to TSS: | 322 |
|---|---|
| Nearest PromoterID: | NM_010518 |
| Entrez ID: | 16011 |
| Nearest Unigene: | Mm.405761 |
| Nearest Refseq: | NM_010518 |
| Nearest Ensembl: | ENSMUSG00000026185 |
| Gene Name: | insulin-like growth factor binding protein 5 |
| Gene Alias: | AI256729|AW208790|IGFBP-5|IGFBP-5P |
| Gene Description: | insulin-like growth factor binding protein 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.507463 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 37(CCTTTTCAAGGC,+,0.00) |
