Difference between revisions of "TSS:Mm 99823.1"
From referenceTSS
| Line 2: | Line 2: | ||
|Axil= | |Axil= | ||
|Conductin= | |Conductin= | ||
| − | |all_trans=ENSMUST00000052915.13:0 NM_015732 | + | |all_trans=ENSMUST00000052915.13:0 NM_015732:0 AK142333:0 BC057338:8 AK049192:49 AF073788:126 ENSMUST00000140821.1:442 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| Line 11: | Line 11: | ||
|entrez_id=12006 | |entrez_id=12006 | ||
|gc_percent=0.751244 | |gc_percent=0.751244 | ||
| − | |gene_alias=Axi1 | + | |gene_alias=Axi1{{!}}Axil{{!}}Conductin |
|gene_description=axin 2 | |gene_description=axin 2 | ||
|gene_id=12006 | |gene_id=12006 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_015732 | |nearest_refseq=NM_015732 | ||
|nearest_unigene=Mm.71710 | |nearest_unigene=Mm.71710 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=mouse | |species=mouse | ||
|start=108920342 | |start=108920342 | ||
|start_of_center_position=108920350 | |start_of_center_position=108920350 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-34(GTCCCTTTAAGG,-,0.00),-32(CCCTTTAAGGCG,+,0.00),-31(CCTTTAAGGCGG,+,0.00) |
| − | |transcript_name=ENSMUST00000052915.13 NM_015732 | + | |transcript_name=ENSMUST00000052915.13 NM_015732 AK142333 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99823.1 | |tss_id=mm_99823.1 | ||
Revision as of 04:00, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 108920350 |
|---|---|
| End of the center position in the TSS region: | 108920351 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000052915.13 NM_015732 AK142333 |
|---|---|
| Distance: | 0 |
| Num_trans: | 7 |
| All_trans: | ENSMUST00000052915.13:0 NM_015732:0 AK142333:0 BC057338:8 AK049192:49 AF073788:126 ENSMUST00000140821.1:442 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_015732 |
| Entrez ID: | 12006 |
| Nearest Unigene: | Mm.71710 |
| Nearest Refseq: | NM_015732 |
| Nearest Ensembl: | ENSMUSG00000000142 |
| Gene Name: | axin 2 |
| Gene Alias: | Axi1|Axil|Conductin |
| Gene Description: | axin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.751244 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(GTCCCTTTAAGG,-,0.00),-32(CCCTTTAAGGCG,+,0.00),-31(CCTTTAAGGCGG,+,0.00) |
