Difference between revisions of "TSS:Mm 9988.1"
From referenceTSS
| Line 2: | Line 2: | ||
|SCIRP10= | |SCIRP10= | ||
|Spuf= | |Spuf= | ||
| − | |all_trans= | + | |all_trans=AK020403:0 AK009304:0 AK155319:0 AK004329:0 BC048464:0 AK002413:0 AB126218:0 NM_025424:-5 ENSMUST00000046770.9:-68 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=23 |
|end=191318126 | |end=191318126 | ||
|end_of_center_position=191318109 | |end_of_center_position=191318109 | ||
|entrez_id=66208 | |entrez_id=66208 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=1110060M21Rik | + | |gene_alias=1110060M21Rik{{!}}SCIRP10{{!}}Spuf |
|gene_description=neuron derived neurotrophic factor | |gene_description=neuron derived neurotrophic factor | ||
|gene_id=66208 | |gene_id=66208 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_025424 | |nearest_refseq=NM_025424 | ||
|nearest_unigene=Mm.46444 | |nearest_unigene=Mm.46444 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=191318090 | |start=191318090 | ||
|start_of_center_position=191318108 | |start_of_center_position=191318108 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AK020403 AK009304 AK155319 AK004329 BC048464 AK002413 AB126218 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_9988.1 | |tss_id=mm_9988.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 04:01, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 191318108 |
|---|---|
| End of the center position in the TSS region: | 191318109 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK020403 AK009304 AK155319 AK004329 BC048464 AK002413 AB126218 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | AK020403:0 AK009304:0 AK155319:0 AK004329:0 BC048464:0 AK002413:0 AB126218:0 NM_025424:-5 ENSMUST00000046770.9:-68 |
TATA-Box annotation
| Distance to TSS: | 23 |
|---|---|
| Nearest PromoterID: | NM_025424 |
| Entrez ID: | 66208 |
| Nearest Unigene: | Mm.46444 |
| Nearest Refseq: | NM_025424 |
| Nearest Ensembl: | ENSMUSG00000037499 |
| Gene Name: | neuron derived neurotrophic factor |
| Gene Alias: | 1110060M21Rik|SCIRP10|Spuf |
| Gene Description: | neuron derived neurotrophic factor |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
