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Difference between revisions of "TSS:Mm 99880.1"

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Line 2: Line 2:
 
|ESTM12=
 
|ESTM12=
 
|X83328=
 
|X83328=
|all_trans=NM_001252193:0 uc007mcj.2:0 ENSMUST00000103061.1:4 BC025087:4 AK075748:-149 AK004062:-168 ENSMUST00000125108.1:-173 AK143908:-173 ENSMUST00000020929.15:-179 AK077195:-179 ENSMUST00000092500.10:-209 NM_025275:-209 uc007mcg.1:-209 uc007mch.1:-209 uc007mci.2:-209
+
|all_trans=ENSMUST00000238825.1:0 NM_001252193:0 ENSMUST00000103061.2:4 BC025087:4 AK075748:-149 AK004062:-168 ENSMUST00000125108.1:-173 AK143908:-173 ENSMUST00000020929.16:-179 AK077195:-179 ENSMUST00000092500.10:-209 NM_025275:-209
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.07
 
|cpg_percent=0.07
Line 11: Line 11:
 
|entrez_id=13929
 
|entrez_id=13929
 
|gc_percent=0.641791
 
|gc_percent=0.641791
|gene_alias=AA408420
+
|gene_alias=AA408420{{!}}ESTM12{{!}}X83328
 
|gene_description=archaelysin family metallopeptidase 2
 
|gene_description=archaelysin family metallopeptidase 2
 
|gene_id=13929
 
|gene_id=13929
Line 24: Line 24:
 
|nearest_refseq=NM_025275
 
|nearest_refseq=NM_025275
 
|nearest_unigene=Mm.211850
 
|nearest_unigene=Mm.211850
|num_trans=15
+
|num_trans=12
 
|species=mouse
 
|species=mouse
 
|start=109426154
 
|start=109426154
 
|start_of_center_position=109426188
 
|start_of_center_position=109426188
 
|strand=+
 
|strand=+
|transcript_name=NM_001252193 uc007mcj.2
+
|transcript_name=ENSMUST00000238825.1 NM_001252193
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=mm_99880.1
 
|tss_id=mm_99880.1

Revision as of 04:01, 22 June 2021

Basic information about the TSS


TSS ID:mm_99880.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:109426154
End:109426222
Strand:+
TSS Score:1
Start of the center position in the TSS region:109426188
End of the center position in the TSS region:109426189



Gene and protein annotation


Transcript_name:ENSMUST00000238825.1 NM_001252193
Distance:0
GeneID:13929
HGNC/MGI_ID:MGI:104837
UniProt_ID:B1AT59 Q400C8
Gene_name:archaelysin family metallopeptidase 2
Gene_symbol:Amz2
Gene_synonyms:ESTM12
Gene_source:MGI:104837



Transcript annotation


Transcript_name:ENSMUST00000238825.1 NM_001252193
Distance:0
Num_trans:12
All_trans:ENSMUST00000238825.1:0 NM_001252193:0 ENSMUST00000103061.2:4 BC025087:4 AK075748:-149 AK004062:-168 ENSMUST00000125108.1:-173 AK143908:-173 ENSMUST00000020929.16:-179 AK077195:-179 ENSMUST00000092500.10:-209 NM_025275:-209



TATA-Box annotation


Distance to TSS:-32
Nearest PromoterID:NM_001252193
Entrez ID:13929
Nearest Unigene:Mm.211850
Nearest Refseq:NM_025275
Nearest Ensembl:ENSMUSG00000020610
Gene Name:archaelysin family metallopeptidase 2
Gene Alias:AA408420|ESTM12|X83328
Gene Description:archaelysin family metallopeptidase 2
Gene Type:protein-coding
CpG%:0.07
GC%:0.641791
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):