Difference between revisions of "TSS:Mm 99963.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000123466.1:0 ENSMUST00000106621.3:0 AK139389:0 AK017508:0 ENSMUST00000042227.14 | + | |all_trans=ENSMUST00000123466.1:0 ENSMUST00000106621.3:0 NM_177777:0 NM_001361593:0 AK139389:0 AK017508:0 ENSMUST00000042227.14:-14 BC048942:-14 AK171307:-20 AK019727:-402 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=19 |
|end=113684480 | |end=113684480 | ||
|end_of_center_position=113684453 | |end_of_center_position=113684453 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=DNA segment, Chr 11, Wayne State University 47, expressed |
|gene_id=276852 | |gene_id=276852 | ||
| − | |gene_name= | + | |gene_name=DNA segment, Chr 11, Wayne State University 47, expressed |
|gene_source=MGI:106356 | |gene_source=MGI:106356 | ||
|gene_symbol=D11Wsu47e | |gene_symbol=D11Wsu47e | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:106356 | |hgnc_mgi_id=MGI:106356 | ||
|nearest_ensembl=ENSMUSG00000041623 | |nearest_ensembl=ENSMUSG00000041623 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001361593 |
|nearest_refseq=NM_177777 | |nearest_refseq=NM_177777 | ||
|nearest_unigene=Mm.239566 | |nearest_unigene=Mm.239566 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=mouse | |species=mouse | ||
|start=113684425 | |start=113684425 | ||
|start_of_center_position=113684452 | |start_of_center_position=113684452 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000123466.1 ENSMUST00000106621.3 AK139389 AK017508 | + | |transcript_name=ENSMUST00000123466.1 ENSMUST00000106621.3 NM_177777 NM_001361593 AK139389 AK017508 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99963.1 | |tss_id=mm_99963.1 | ||
Revision as of 04:03, 22 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 113684452 |
|---|---|
| End of the center position in the TSS region: | 113684453 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000123466.1 ENSMUST00000106621.3 NM_177777 NM_001361593 AK139389 AK017508 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10 |
| All_trans: | ENSMUST00000123466.1:0 ENSMUST00000106621.3:0 NM_177777:0 NM_001361593:0 AK139389:0 AK017508:0 ENSMUST00000042227.14:-14 BC048942:-14 AK171307:-20 AK019727:-402 |
TATA-Box annotation
| Distance to TSS: | 19 |
|---|---|
| Nearest PromoterID: | NM_001361593 |
| Entrez ID: | 276852 |
| Nearest Unigene: | Mm.239566 |
| Nearest Refseq: | NM_177777 |
| Nearest Ensembl: | ENSMUSG00000041623 |
| Gene Name: | DNA segment, Chr 11, Wayne State University 47, expressed |
| Gene Alias: | - |
| Gene Description: | DNA segment, Chr 11, Wayne State University 47, expressed |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
