Difference between revisions of "TSS:Mm 99973.1"
From referenceTSS
| Line 2: | Line 2: | ||
|Borg4= | |Borg4= | ||
|CEP4= | |CEP4= | ||
| + | |all_trans=NR_168674:0 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=-34367 | |distance_to_tss=-34367 | ||
|end=113786204 | |end=113786204 | ||
| Line 10: | Line 11: | ||
|entrez_id=56699 | |entrez_id=56699 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
| − | |gene_alias=1500041M20Rik | + | |gene_alias=1500041M20Rik{{!}}Borg4{{!}}CEP4 |
|gene_description=CDC42 effector protein (Rho GTPase binding) 4 | |gene_description=CDC42 effector protein (Rho GTPase binding) 4 | ||
| − | |gene_name= | + | |gene_id=105243583 |
| + | |gene_name=predicted gene, 39468 | ||
| + | |gene_source=MGI:5622353 | ||
| + | |gene_symbol=Gm39468 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=MGI:5622353 | ||
|nearest_ensembl=ENSMUSG00000041598 | |nearest_ensembl=ENSMUSG00000041598 | ||
|nearest_promoter_id=NM_001163346 | |nearest_promoter_id=NM_001163346 | ||
|nearest_refseq=NM_020006 | |nearest_refseq=NM_020006 | ||
|nearest_unigene=Mm.293378 | |nearest_unigene=Mm.293378 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=mouse | |species=mouse | ||
|start=113786159 | |start=113786159 | ||
|start_of_center_position=113786181 | |start_of_center_position=113786181 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NR_168674 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99973.1 | |tss_id=mm_99973.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 04:03, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 113786181 |
|---|---|
| End of the center position in the TSS region: | 113786182 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NR_168674 |
|---|---|
| Distance: | 0 |
| Num_trans: | 1 |
| All_trans: | NR_168674:0 |
TATA-Box annotation
| Distance to TSS: | -34367 |
|---|---|
| Nearest PromoterID: | NM_001163346 |
| Entrez ID: | 56699 |
| Nearest Unigene: | Mm.293378 |
| Nearest Refseq: | NM_020006 |
| Nearest Ensembl: | ENSMUSG00000041598 |
| Gene Name: | predicted gene, 39468 |
| Gene Alias: | 1500041M20Rik|Borg4|CEP4 |
| Gene Description: | CDC42 effector protein (Rho GTPase binding) 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
