Difference between revisions of "TSS:Mm 99982.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Ts= | |Ts= | ||
|Tss= | |Tss= | ||
| − | |all_trans= | + | |all_trans=BC094258:7 BC094644:7 BC081447:23 ENSMUST00000082092.4:-128 BC047046:-137 ENSMUST00000106599.7:-145 AK010277:-147 AK151517:-147 BC034339:-150 AK010518:-163 AK012391:-163 BC055346:-163 NM_001048058:-174 NM_001048057:-174 NM_001362918:-174 NM_023372:-174 AK002659:-176 ENSMUST00000077915.9:-206 ENSMUST00000106602.9:-230 AB037665:-230 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
|distance=7 | |distance=7 | ||
| − | |distance_to_tss= | + | |distance_to_tss=184 |
|end=114668774 | |end=114668774 | ||
|end_of_center_position=114668764 | |end_of_center_position=114668764 | ||
|entrez_id=67671 | |entrez_id=67671 | ||
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
| − | |gene_alias=0610025G13Rik | + | |gene_alias=0610025G13Rik{{!}}Rbt{{!}}Ts{{!}}Tss |
|gene_description=ribosomal protein L38 | |gene_description=ribosomal protein L38 | ||
|gene_id=67671 | |gene_id=67671 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_023372 | |nearest_refseq=NM_023372 | ||
|nearest_unigene=Mm.238817 | |nearest_unigene=Mm.238817 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=mouse | |species=mouse | ||
|start=114668753 | |start=114668753 | ||
|start_of_center_position=114668763 | |start_of_center_position=114668763 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=BC094258 BC094644 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99982.1 | |tss_id=mm_99982.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 04:03, 22 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 114668763 |
|---|---|
| End of the center position in the TSS region: | 114668764 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC094258 BC094644 |
|---|---|
| Distance: | 7 |
| Num_trans: | 20 |
| All_trans: | BC094258:7 BC094644:7 BC081447:23 ENSMUST00000082092.4:-128 BC047046:-137 ENSMUST00000106599.7:-145 AK010277:-147 AK151517:-147 BC034339:-150 AK010518:-163 AK012391:-163 BC055346:-163 NM_001048058:-174 NM_001048057:-174 NM_001362918:-174 NM_023372:-174 AK002659:-176 ENSMUST00000077915.9:-206 ENSMUST00000106602.9:-230 AB037665:-230 |
TATA-Box annotation
| Distance to TSS: | 184 |
|---|---|
| Nearest PromoterID: | NM_001048058 |
| Entrez ID: | 67671 |
| Nearest Unigene: | Mm.238817 |
| Nearest Refseq: | NM_023372 |
| Nearest Ensembl: | ENSMUSG00000057322 |
| Gene Name: | ribosomal protein L38 |
| Gene Alias: | 0610025G13Rik|Rbt|Ts|Tss |
| Gene Description: | ribosomal protein L38 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
