Difference between revisions of "TSS:Hg 100004.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |HMGIC/NFIB= | ||
| + | |MACID= | ||
| + | |NF-I/B= | ||
| + | |NF1-B= | ||
| + | |NFI-B= | ||
| + | |NFI-RED= | ||
| + | |NFIB2= | ||
| + | |NFIB3= | ||
| + | |all_trans=LF355361:-42 MA590938:-42 ENST00000397579.6:62 ENST00000397581.6:125 LF355360:142 MA590937:142 NR_161382:-308 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance_to_tss= | + | |distance=-42 |
| + | |distance_to_tss=309 | ||
| + | |end=14314646 | ||
| + | |end_of_center_position=14314645 | ||
|entrez_id=4781 | |entrez_id=4781 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
| − | |gene_alias=CTF | + | |gene_alias=CTF{{!}}HMGIC/NFIB{{!}}MACID{{!}}NF-I/B{{!}}NF1-B{{!}}NFI-B{{!}}NFI-RED{{!}}NFIB2{{!}}NFIB3 |
|gene_description=nuclear factor I B | |gene_description=nuclear factor I B | ||
| + | |gene_id=4781 | ||
|gene_name=NFIB | |gene_name=NFIB | ||
| + | |gene_source=HGNC:7785 | ||
| + | |gene_symbol=NFIB | ||
| + | |gene_synonyms=NFI-RED NFIB2 NFIB3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:7785 | ||
|nearest_ensembl=ENSG00000147862 | |nearest_ensembl=ENSG00000147862 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_161382 |
|nearest_refseq=NM_005596 | |nearest_refseq=NM_005596 | ||
|nearest_unigene=Hs.644095 | |nearest_unigene=Hs.644095 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=14314643 | ||
| + | |start_of_center_position=14314644 | ||
| + | |strand=- | ||
| + | |transcript_name=LF355361 MA590938 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100004.1 | |tss_id=hg_100004.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5VW27 | ||
}} | }} | ||
Latest revision as of 17:35, 12 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 14314644 |
|---|---|
| End of the center position in the TSS region: | 14314645 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF355361 MA590938 |
|---|---|
| Distance: | -42 |
| Num_trans: | 7 |
| All_trans: | LF355361:-42 MA590938:-42 ENST00000397579.6:62 ENST00000397581.6:125 LF355360:142 MA590937:142 NR_161382:-308 |
TATA-Box annotation
| Distance to TSS: | 309 |
|---|---|
| Nearest PromoterID: | NR_161382 |
| Entrez ID: | 4781 |
| Nearest Unigene: | Hs.644095 |
| Nearest Refseq: | NM_005596 |
| Nearest Ensembl: | ENSG00000147862 |
| Gene Name: | NFIB |
| Gene Alias: | CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 |
| Gene Description: | nuclear factor I B |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
