Difference between revisions of "TSS:Hg 101796.1"
From referenceTSS
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| Line 4: | Line 4: | ||
|HDLDT1= | |HDLDT1= | ||
|TGD= | |TGD= | ||
| − | |all_trans=AF165281:462 AJ012376:462 | + | |all_trans=LF354690:54 MA590267:54 LF354689:287 MA590266:287 AF165281:462 AJ012376:462 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=54 |
| − | |distance_to_tss= | + | |distance_to_tss=38481 |
|end=104889691 | |end=104889691 | ||
|end_of_center_position=104889674 | |end_of_center_position=104889674 | ||
|entrez_id=19 | |entrez_id=19 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
| − | |gene_alias=ABC-1 | + | |gene_alias=ABC-1{{!}}ABC1{{!}}CERP{{!}}HDLDT1{{!}}TGD |
|gene_description=ATP binding cassette subfamily A member 1 | |gene_description=ATP binding cassette subfamily A member 1 | ||
|gene_id=19 | |gene_id=19 | ||
| − | |gene_name= | + | |gene_name=ABCA1 |
|gene_source=HGNC:29 | |gene_source=HGNC:29 | ||
|gene_symbol=ABCA1 | |gene_symbol=ABCA1 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_005502 | |nearest_refseq=NM_005502 | ||
|nearest_unigene=Hs.659274 | |nearest_unigene=Hs.659274 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=104889656 | |start=104889656 | ||
|start_of_center_position=104889673 | |start_of_center_position=104889673 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF354690 MA590267 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_101796.1 | |tss_id=hg_101796.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 18:11, 12 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 104889673 |
|---|---|
| End of the center position in the TSS region: | 104889674 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF354690 MA590267 |
|---|---|
| Distance: | 54 |
| Num_trans: | 6 |
| All_trans: | LF354690:54 MA590267:54 LF354689:287 MA590266:287 AF165281:462 AJ012376:462 |
TATA-Box annotation
| Distance to TSS: | 38481 |
|---|---|
| Nearest PromoterID: | NM_005502 |
| Entrez ID: | 19 |
| Nearest Unigene: | Hs.659274 |
| Nearest Refseq: | NM_005502 |
| Nearest Ensembl: | ENSG00000165029 |
| Gene Name: | ABCA1 |
| Gene Alias: | ABC-1|ABC1|CERP|HDLDT1|TGD |
| Gene Description: | ATP binding cassette subfamily A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
