Difference between revisions of "TSS:Hg 102211.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 3: | Line 3: | ||
|CD30LG= | |CD30LG= | ||
|TNLG3A= | |TNLG3A= | ||
| + | |all_trans=LF355054:2 MA590631:2 LF355053:66 MA590630:66 LF355052:228 MA590629:228 LF355051:311 MA590628:311 LF355050:439 MA590627:439 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance= | + | |distance=2 |
|distance_to_tss=-90669 | |distance_to_tss=-90669 | ||
|end=115021270 | |end=115021270 | ||
| Line 11: | Line 12: | ||
|entrez_id=944 | |entrez_id=944 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
| − | |gene_alias=CD153 | + | |gene_alias=CD153{{!}}CD30L{{!}}CD30LG{{!}}TNLG3A |
| − | |gene_description= | + | |gene_description=TNF superfamily member 8 |
|gene_name=TNFSF8 | |gene_name=TNFSF8 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 19: | Line 20: | ||
|nearest_refseq=NM_001244 | |nearest_refseq=NM_001244 | ||
|nearest_unigene=Hs.494901 | |nearest_unigene=Hs.494901 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=115021258 | |start=115021258 | ||
|start_of_center_position=115021264 | |start_of_center_position=115021264 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF355054 MA590631 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_102211.1 | |tss_id=hg_102211.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:20, 12 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 115021264 |
|---|---|
| End of the center position in the TSS region: | 115021265 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | LF355054 MA590631 |
|---|---|
| Distance: | 2 |
| Num_trans: | 10 |
| All_trans: | LF355054:2 MA590631:2 LF355053:66 MA590630:66 LF355052:228 MA590629:228 LF355051:311 MA590628:311 LF355050:439 MA590627:439 |
TATA-Box annotation
| Distance to TSS: | -90669 |
|---|---|
| Nearest PromoterID: | NM_001252290 |
| Entrez ID: | 944 |
| Nearest Unigene: | Hs.494901 |
| Nearest Refseq: | NM_001244 |
| Nearest Ensembl: | ENSG00000106952 |
| Gene Name: | TNFSF8 |
| Gene Alias: | CD153|CD30L|CD30LG|TNLG3A |
| Gene Description: | TNF superfamily member 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
