Difference between revisions of "TSS:Hg 10282.1"
From referenceTSS
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| Line 3: | Line 3: | ||
|SPS1= | |SPS1= | ||
|SRML1= | |SRML1= | ||
| − | |all_trans=ENST00000490101.1:4 | + | |all_trans=LF357389:0 MA592966:0 ENST00000490101.1:4 LF357387:-238 MA592964:-238 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=4178 |
|end=11055857 | |end=11055857 | ||
|end_of_center_position=11055841 | |end_of_center_position=11055841 | ||
|entrez_id=6723 | |entrez_id=6723 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| − | |gene_alias=PAPT | + | |gene_alias=PAPT{{!}}SPDSY{{!}}SPS1{{!}}SRML1 |
|gene_description=spermidine synthase | |gene_description=spermidine synthase | ||
|gene_id=6723 | |gene_id=6723 | ||
| − | |gene_name= | + | |gene_name=SRM |
|gene_source=HGNC:11296 | |gene_source=HGNC:11296 | ||
|gene_symbol=SRM | |gene_symbol=SRM | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_003132 | |nearest_refseq=NM_003132 | ||
|nearest_unigene=Hs.76244 | |nearest_unigene=Hs.76244 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=11055823 | |start=11055823 | ||
|start_of_center_position=11055840 | |start_of_center_position=11055840 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF357389 MA592966 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_10282.1 | |tss_id=hg_10282.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=K7EL89 | |uniprot_id=K7EL89 | ||
}} | }} | ||
Latest revision as of 18:32, 12 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 11055840 |
|---|---|
| End of the center position in the TSS region: | 11055841 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF357389 MA592966 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | LF357389:0 MA592966:0 ENST00000490101.1:4 LF357387:-238 MA592964:-238 |
TATA-Box annotation
| Distance to TSS: | 4178 |
|---|---|
| Nearest PromoterID: | NM_003132 |
| Entrez ID: | 6723 |
| Nearest Unigene: | Hs.76244 |
| Nearest Refseq: | NM_003132 |
| Nearest Ensembl: | ENSG00000116649 |
| Gene Name: | SRM |
| Gene Alias: | PAPT|SPDSY|SPS1|SRML1 |
| Gene Description: | spermidine synthase |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
