Difference between revisions of "TSS:Hg 103516.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 7: | Line 7: | ||
|ST12= | |ST12= | ||
|ZF9= | |ZF9= | ||
| + | |all_trans=LF330739:-135 MA566316:-135 LF330740:-244 MA566317:-244 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| − | |distance= | + | |distance=-135 |
|distance_to_tss=-662 | |distance_to_tss=-662 | ||
|end=3785958 | |end=3785958 | ||
| Line 15: | Line 16: | ||
|entrez_id=1316 | |entrez_id=1316 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| − | |gene_alias=BCD1 | + | |gene_alias=BCD1{{!}}CBA1{{!}}COPEB{{!}}CPBP{{!}}GBF{{!}}PAC1{{!}}ST12{{!}}ZF9 |
|gene_description=Kruppel like factor 6 | |gene_description=Kruppel like factor 6 | ||
|gene_name=KLF6 | |gene_name=KLF6 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000067082 | |nearest_ensembl=ENSG00000067082 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001160125 |
|nearest_refseq=NM_001300 | |nearest_refseq=NM_001300 | ||
|nearest_unigene=Hs.4055 | |nearest_unigene=Hs.4055 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=3785928 | |start=3785928 | ||
|start_of_center_position=3785943 | |start_of_center_position=3785943 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF330739 MA566316 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_103516.1 | |tss_id=hg_103516.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:47, 12 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3785943 |
|---|---|
| End of the center position in the TSS region: | 3785944 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF330739 MA566316 |
|---|---|
| Distance: | -135 |
| Num_trans: | 4 |
| All_trans: | LF330739:-135 MA566316:-135 LF330740:-244 MA566317:-244 |
TATA-Box annotation
| Distance to TSS: | -662 |
|---|---|
| Nearest PromoterID: | NM_001160125 |
| Entrez ID: | 1316 |
| Nearest Unigene: | Hs.4055 |
| Nearest Refseq: | NM_001300 |
| Nearest Ensembl: | ENSG00000067082 |
| Gene Name: | KLF6 |
| Gene Alias: | BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 |
| Gene Description: | Kruppel like factor 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
