Difference between revisions of "TSS:Hg 103946.1"
From referenceTSS
| (2 intermediate revisions by the same user not shown) | |||
| Line 6: | Line 6: | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=-2009 | |distance_to_tss=-2009 | ||
|end=13302145 | |end=13302145 | ||
| + | |end_of_center_position=13302139 | ||
|entrez_id=5264 | |entrez_id=5264 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
| − | |gene_alias=LN1 | + | |gene_alias=LN1{{!}}LNAP1{{!}}PAHX{{!}}PHYH1{{!}}RD |
|gene_description=phytanoyl-CoA 2-hydroxylase | |gene_description=phytanoyl-CoA 2-hydroxylase | ||
|gene_name=PHYH | |gene_name=PHYH | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000107537 | |nearest_ensembl=ENSG00000107537 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001323083 |
|nearest_refseq=NM_006214 | |nearest_refseq=NM_006214 | ||
|nearest_unigene=Hs.498732 | |nearest_unigene=Hs.498732 | ||
| Line 22: | Line 23: | ||
|species=human | |species=human | ||
|start=13302132 | |start=13302132 | ||
| + | |start_of_center_position=13302138 | ||
|strand=+ | |strand=+ | ||
|transcript_name= | |transcript_name= | ||
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_103946.1 | |tss_id=hg_103946.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:55, 12 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 13302138 |
|---|---|
| End of the center position in the TSS region: | 13302139 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -2009 |
|---|---|
| Nearest PromoterID: | NM_001323083 |
| Entrez ID: | 5264 |
| Nearest Unigene: | Hs.498732 |
| Nearest Refseq: | NM_006214 |
| Nearest Ensembl: | ENSG00000107537 |
| Gene Name: | PHYH |
| Gene Alias: | LN1|LNAP1|PAHX|PHYH1|RD |
| Gene Description: | phytanoyl-CoA 2-hydroxylase |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
