Difference between revisions of "TSS:Hg 104068.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=-5230 |entrez_id=100507347 |gc_percent=0.477612 |gene_alias=- |gene_description=VIM antisense RNA 1 |gene_name=VIM-AS1 |gene_typ...") |
|||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=LF346185:-32 MA581762:-32 LF346186:65 MA581763:65 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=-32 | ||
|distance_to_tss=-5230 | |distance_to_tss=-5230 | ||
| + | |end=17235232 | ||
| + | |end_of_center_position=17235215 | ||
|entrez_id=100507347 | |entrez_id=100507347 | ||
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NR_108060 | |nearest_refseq=NR_108060 | ||
|nearest_unigene=Hs.740502 | |nearest_unigene=Hs.740502 | ||
| + | |num_trans=4 | ||
| + | |species=human | ||
| + | |start=17235197 | ||
| + | |start_of_center_position=17235214 | ||
| + | |strand=+ | ||
| + | |transcript_name=LF346185 MA581762 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104068.1 | |tss_id=hg_104068.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:58, 12 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17235214 |
|---|---|
| End of the center position in the TSS region: | 17235215 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF346185 MA581762 |
|---|---|
| Distance: | -32 |
| Num_trans: | 4 |
| All_trans: | LF346185:-32 MA581762:-32 LF346186:65 MA581763:65 |
TATA-Box annotation
| Distance to TSS: | -5230 |
|---|---|
| Nearest PromoterID: | NR_108061 |
| Entrez ID: | 100507347 |
| Nearest Unigene: | Hs.740502 |
| Nearest Refseq: | NR_108060 |
| Nearest Ensembl: | ENSG00000229124 |
| Gene Name: | VIM-AS1 |
| Gene Alias: | - |
| Gene Description: | VIM antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.03 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
