Difference between revisions of "TSS:Hg 104755.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=4008 |entrez_id=53828 |gc_percent=0.621891 |gene_alias=CHIF |gene_description=FXYD domain containing ion transport regulator 4 |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=LF365347:-3 MA600924:-3 LF365348:-188 MA600925:-188 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=-3 | ||
|distance_to_tss=4008 | |distance_to_tss=4008 | ||
| + | |end=43375657 | ||
| + | |end_of_center_position=43375652 | ||
|entrez_id=53828 | |entrez_id=53828 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| Line 9: | Line 14: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000150201 | |nearest_ensembl=ENSG00000150201 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001184963 |
|nearest_refseq=NM_173160 | |nearest_refseq=NM_173160 | ||
|nearest_unigene=Hs.130497 | |nearest_unigene=Hs.130497 | ||
| + | |num_trans=4 | ||
| + | |species=human | ||
| + | |start=43375646 | ||
| + | |start_of_center_position=43375651 | ||
| + | |strand=+ | ||
| + | |transcript_name=LF365347 MA600924 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104755.1 | |tss_id=hg_104755.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 19:12, 12 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 43375651 |
|---|---|
| End of the center position in the TSS region: | 43375652 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF365347 MA600924 |
|---|---|
| Distance: | -3 |
| Num_trans: | 4 |
| All_trans: | LF365347:-3 MA600924:-3 LF365348:-188 MA600925:-188 |
TATA-Box annotation
| Distance to TSS: | 4008 |
|---|---|
| Nearest PromoterID: | NM_001184963 |
| Entrez ID: | 53828 |
| Nearest Unigene: | Hs.130497 |
| Nearest Refseq: | NM_173160 |
| Nearest Ensembl: | ENSG00000150201 |
| Gene Name: | FXYD4 |
| Gene Alias: | CHIF |
| Gene Description: | FXYD domain containing ion transport regulator 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
