Difference between revisions of "TSS:Hg 105166.1"
From referenceTSS
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| Line 3: | Line 3: | ||
|CMT4E= | |CMT4E= | ||
|KROX20= | |KROX20= | ||
| + | |all_trans=LF213187:-48 MA448764:-48 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| − | |distance= | + | |distance=-48 |
| − | |distance_to_tss=- | + | |distance_to_tss=-437 |
|end=62816812 | |end=62816812 | ||
| + | |end_of_center_position=62816804 | ||
|entrez_id=1959 | |entrez_id=1959 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| − | |gene_alias=AT591 | + | |gene_alias=AT591{{!}}CHN1{{!}}CMT1D{{!}}CMT4E{{!}}KROX20 |
|gene_description=early growth response 2 | |gene_description=early growth response 2 | ||
|gene_name=EGR2 | |gene_name=EGR2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000122877 | |nearest_ensembl=ENSG00000122877 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001136177 |
|nearest_refseq=NM_000399 | |nearest_refseq=NM_000399 | ||
|nearest_unigene=Hs.1395 | |nearest_unigene=Hs.1395 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=62816794 | |start=62816794 | ||
| + | |start_of_center_position=62816803 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF213187 MA448764 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_105166.1 | |tss_id=hg_105166.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 19:20, 12 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 62816803 |
|---|---|
| End of the center position in the TSS region: | 62816804 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF213187 MA448764 |
|---|---|
| Distance: | -48 |
| Num_trans: | 2 |
| All_trans: | LF213187:-48 MA448764:-48 |
TATA-Box annotation
| Distance to TSS: | -437 |
|---|---|
| Nearest PromoterID: | NM_001136177 |
| Entrez ID: | 1959 |
| Nearest Unigene: | Hs.1395 |
| Nearest Refseq: | NM_000399 |
| Nearest Ensembl: | ENSG00000122877 |
| Gene Name: | EGR2 |
| Gene Alias: | AT591|CHN1|CMT1D|CMT4E|KROX20 |
| Gene Description: | early growth response 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
