Difference between revisions of "TSS:Hg 105565.1"
From referenceTSS
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| Line 4: | Line 4: | ||
|UPA= | |UPA= | ||
|URK= | |URK= | ||
| − | |all_trans=AB208961:-90 | + | |all_trans=LF333159:-49 MA568736:-49 AB208961:-90 LF333160:284 MA568737:284 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance=- | + | |distance=-49 |
| − | |distance_to_tss= | + | |distance_to_tss=2554 |
|end=73913694 | |end=73913694 | ||
|end_of_center_position=73913687 | |end_of_center_position=73913687 | ||
|entrez_id=5328 | |entrez_id=5328 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
| − | |gene_alias=ATF | + | |gene_alias=ATF{{!}}BDPLT5{{!}}QPD{{!}}UPA{{!}}URK{{!}}u-PA |
| − | |gene_description= | + | |gene_description=plasminogen activator, urokinase |
|gene_id=5328 | |gene_id=5328 | ||
| − | |gene_name= | + | |gene_name=PLAU |
|gene_source=HGNC:9052 | |gene_source=HGNC:9052 | ||
|gene_symbol=PLAU | |gene_symbol=PLAU | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:9052 | |hgnc_mgi_id=HGNC:9052 | ||
|nearest_ensembl=ENSG00000122861 | |nearest_ensembl=ENSG00000122861 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_002658 |
|nearest_refseq=NM_002658 | |nearest_refseq=NM_002658 | ||
|nearest_unigene=Hs.77274 | |nearest_unigene=Hs.77274 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=73913678 | |start=73913678 | ||
|start_of_center_position=73913686 | |start_of_center_position=73913686 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF333159 MA568736 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_105565.1 | |tss_id=hg_105565.1 | ||
|tss_score=1 | |tss_score=1 | ||
Latest revision as of 19:28, 12 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 73913686 |
|---|---|
| End of the center position in the TSS region: | 73913687 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF333159 MA568736 |
|---|---|
| Distance: | -49 |
| Num_trans: | 5 |
| All_trans: | LF333159:-49 MA568736:-49 AB208961:-90 LF333160:284 MA568737:284 |
TATA-Box annotation
| Distance to TSS: | 2554 |
|---|---|
| Nearest PromoterID: | NM_002658 |
| Entrez ID: | 5328 |
| Nearest Unigene: | Hs.77274 |
| Nearest Refseq: | NM_002658 |
| Nearest Ensembl: | ENSG00000122861 |
| Gene Name: | PLAU |
| Gene Alias: | ATF|BDPLT5|QPD|UPA|URK|u-PA |
| Gene Description: | plasminogen activator, urokinase |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
