Difference between revisions of "TSS:Hg 105606.1"
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{{TSSDetail | {{TSSDetail | ||
|FMDSP= | |FMDSP= | ||
| + | |all_trans=LF333440:-6 MA569017:-6 LF333438:-81 MA569015:-81 LF333441:111 MA569018:111 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance= | + | |distance=-6 |
| − | |distance_to_tss= | + | |distance_to_tss=284 |
|end=75022021 | |end=75022021 | ||
|end_of_center_position=75022018 | |end_of_center_position=75022018 | ||
| − | |entrez_id= | + | |entrez_id=109623471 |
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
| − | |gene_alias= | + | |gene_alias=- |
| − | |gene_description= | + | |gene_description=small nucleolar RNA, C/D box 172 |
| − | |gene_name= | + | |gene_name=SNORD172 |
| − | |gene_type= | + | |gene_type=snoRNA |
| − | |nearest_ensembl= | + | |nearest_ensembl= |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_145812 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_145812 |
| − | |nearest_unigene= | + | |nearest_unigene= |
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=75022013 | |start=75022013 | ||
|start_of_center_position=75022017 | |start_of_center_position=75022017 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF333440 MA569017 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_105606.1 | |tss_id=hg_105606.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 19:29, 12 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 75022017 |
|---|---|
| End of the center position in the TSS region: | 75022018 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | LF333440 MA569017 |
|---|---|
| Distance: | -6 |
| Num_trans: | 6 |
| All_trans: | LF333440:-6 MA569017:-6 LF333438:-81 MA569015:-81 LF333441:111 MA569018:111 |
TATA-Box annotation
| Distance to TSS: | 284 |
|---|---|
| Nearest PromoterID: | NR_145812 |
| Entrez ID: | 109623471 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_145812 |
| Nearest Ensembl: | |
| Gene Name: | SNORD172 |
| Gene Alias: | - |
| Gene Description: | small nucleolar RNA, C/D box 172 |
| Gene Type: | snoRNA |
| CpG%: | 0.025 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
