Difference between revisions of "TSS:Hg 232067.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |NOPP140= | ||
| + | |NS5ATP13= | ||
| + | |P130= | ||
|all_trans=Z34289:4 AK225101:33 AK314363:33 ENST00000464969.6:39 uc057vpb.1:39 AK056755:39 ENST00000488254.6:48 ENST00000603946.5:48 uc001kuq.4:48 uc057vpc.1:48 BC001883:48 BC006769:48 ENST00000461421.5:53 uc057vpd.1:53 DQ891862:54 DQ895051:54 AB383719:55 AY820769:55 ENST00000476468.5:57 uc057vpe.1:57 ENST00000370007.5:59 uc057vpf.1:59 D21262:59 ENST00000605788.5:-178 ENST00000405356.5:-178 NM_001284388:-178 NM_001284389:-178 NM_004741:-178 uc001kuo.4:-178 uc001kup.3:-178 | |all_trans=Z34289:4 AK225101:33 AK314363:33 ENST00000464969.6:39 uc057vpb.1:39 AK056755:39 ENST00000488254.6:48 ENST00000603946.5:48 uc001kuq.4:48 uc057vpc.1:48 BC001883:48 BC006769:48 ENST00000461421.5:53 uc057vpd.1:53 DQ891862:54 DQ895051:54 AB383719:55 AY820769:55 ENST00000476468.5:57 uc057vpe.1:57 ENST00000370007.5:59 uc057vpf.1:59 D21262:59 ENST00000605788.5:-178 ENST00000405356.5:-178 NM_001284388:-178 NM_001284389:-178 NM_004741:-178 uc001kuo.4:-178 uc001kup.3:-178 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=-34 |
| − | |end= | + | |end=102152423 |
| + | |end_of_center_position=102152416 | ||
|entrez_id=9221 | |entrez_id=9221 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
| − | |gene_alias=NOPP130 | + | |gene_alias=NOPP130{{!}}NOPP140{{!}}NS5ATP13{{!}}P130 |
|gene_description=nucleolar and coiled-body phosphoprotein 1 | |gene_description=nucleolar and coiled-body phosphoprotein 1 | ||
|gene_id=9221 | |gene_id=9221 | ||
| − | |gene_name= | + | |gene_name=NOLC1 |
|gene_source=HGNC:15608 | |gene_source=HGNC:15608 | ||
|gene_symbol=NOLC1 | |gene_symbol=NOLC1 | ||
| Line 18: | Line 22: | ||
|hgnc_mgi_id=HGNC:15608 | |hgnc_mgi_id=HGNC:15608 | ||
|nearest_ensembl=ENSG00000166197 | |nearest_ensembl=ENSG00000166197 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_004741 |
|nearest_refseq=NM_004741 | |nearest_refseq=NM_004741 | ||
|nearest_unigene=Hs.523238 | |nearest_unigene=Hs.523238 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
| − | |start= | + | |start=102152407 |
| − | |strand= | + | |start_of_center_position=102152415 |
| − | |transcript_name= | + | |strand=- |
| + | |transcript_name= | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232067.1 | |tss_id=hg_232067.1 | ||
Latest revision as of 08:28, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 102152415 |
|---|---|
| End of the center position in the TSS region: | 102152416 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | Z34289:4 AK225101:33 AK314363:33 ENST00000464969.6:39 uc057vpb.1:39 AK056755:39 ENST00000488254.6:48 ENST00000603946.5:48 uc001kuq.4:48 uc057vpc.1:48 BC001883:48 BC006769:48 ENST00000461421.5:53 uc057vpd.1:53 DQ891862:54 DQ895051:54 AB383719:55 AY820769:55 ENST00000476468.5:57 uc057vpe.1:57 ENST00000370007.5:59 uc057vpf.1:59 D21262:59 ENST00000605788.5:-178 ENST00000405356.5:-178 NM_001284388:-178 NM_001284389:-178 NM_004741:-178 uc001kuo.4:-178 uc001kup.3:-178 |
TATA-Box annotation
| Distance to TSS: | -34 |
|---|---|
| Nearest PromoterID: | NM_004741 |
| Entrez ID: | 9221 |
| Nearest Unigene: | Hs.523238 |
| Nearest Refseq: | NM_004741 |
| Nearest Ensembl: | ENSG00000166197 |
| Gene Name: | NOLC1 |
| Gene Alias: | NOPP130|NOPP140|NS5ATP13|P130 |
| Gene Description: | nucleolar and coiled-body phosphoprotein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
